Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01746 ATGGCTGACGGTCATGAGACTGATAAGAACATTGAGGTGTGGAAAATCAAGAAATTGATCAAAGCTCTTGAGGCTGCTAGAGGAAATGGGACAAGTATGATTTCACTTATCATGCCCCCTCGAGATCAAATATCTCGTGTCACTAAGATGCTTGGTGACGAGTTTGGAACTGCTTCAAACATCAAAAGCAGGGTGAACCGACAGTCAGTTCTAGGTGCTATCACTTCTGCTCAACAGAGGCTTAAGCTCTATAACAAGGTTCCTCCAAATGGGCTCGTTTTGTATACTGGCACAATTGTGACTGAAGATGGGAAGGAAAAGAAGGTCACTATTGATTTTGAGCCTTTCAGACCTATTAATGCATCTCTTTATCTCTGTGACAATAAGTTTCACACTGAAGCTTTGAATGAGCTACTGGAGTCGGATGACAAGTTTGGATTTATTGTCATGGATGGTAATGGTACTTTGTTTGGGACATTGAGTGGTAACACAAGAGAGGTGCTTCATAAATTCAGTGTGGATCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTGCGTTTTGCCCGTCTTCGCATGGAGAAGCGTCATAACTATGTCAGGAAGACAGCAGAGCTTGCTACCCAGTTCTATATCAATCCTACCACCAGTCAACCCAATGTTTCGGGATTAATACTGGCTGGTTCTGCTGATTTCAAAACTGAGCTTAGTCAGTCAGACATGTTTGATCCTCGACTTCAGGCAAAAATACTTAATGTTGTTGATGTTTCATATGGAGGAGAAAATGGTTTTAATCAGGCTATTGAGTTGTCTGCTGAAATTCTTTCCAATGTAAAGTTTATCCAGGAGAAACGATTGATTGGAAAATACTTTGAGGAAATCAGCCAGGATACGGGAAAGTATGTTTTTGGGGTTGATGATACCCTGAAAGCGTTGGAGATGGGTGCTGTTGAGACACTTATTGTCTGGGAAAATCTGGATATGAACAGGTATACCTTGAAAAATGGTGCTACTGGAGAGATTGTCATTAAGCACTATAACAAGGAACAGGATGCCATTCAAAGCAATTTTCGGGATCCTGAAAGCTCTTCTGATTTTGAGGTTCAGGAGAAGTTGTCTCTTTTGGAGTGGTTTGCAAATGAATACAAACGGTTTGGTTGCACTCTTGAGTTTGTCACCAACAAATCTCAAGAAGGTTCACAGTTTTGCAGAGGTTTTGGTGGGATAGGTGGAATCTTGCGTTACCAGCTTGATATGCGAACATTTGATGATTTCTCTGATGATGGAGGCGAAAGGGGAGCCAAAATACCTGCACCAGTGTTGGAGGTGGTTGCACTCGCTGCTCCTCCTCCTCCTCCTCCATATCTGTCCCTGGTTTTAGATTACATATATTGTTCTGTTGAAAATGAAGCAAGTTTCTCTAATTCTTTTCTTAATATGGTTTTTTCAGATGCTTTGCCTCTGAAGTGCCTCTTTCTGATACGAGTTACTTTCTTGTTCTCCTATCTTGCACACTCTGGCTCCACAAATTTCTACAAAGCTTCTGGCAACACCTGCTCTCTACTGCTTGCCCCCAGAAAAGCCAGAACAAAAATATGTTCCTCAGAGAAACACTGCCTGGAATCAAAGAAGATCCCTCACACTGGCCGCCATCTTTTTCATATTCTATGCTATGCTAATACACTTTTCTTGACCATAGGTCCAGTGTTTGAAGAACTTGTTTTTCTGGCTTAA 1737 0.4185 MADGHETDKNIEVWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPTTSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDMNRYTLKNGATGEIVIKHYNKEQDAIQSNFRDPESSSDFEVQEKLSLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRTFDDFSDDGGERGAKIPAPVLEVVALAAPPPPPPYLSLVLDYIYCSVENEASFSNSFLNMVFSDALPLKCLFLIRVTFLFSYLAHSGSTNFYKASGNTCSLLLAPRKARTKICSSEKHCLESKKIPHTGRHLFHILCYANTLFLTIGPVFEELVFLA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01746 578 FunFam Peptide chain release factor subunit 1 279 436 - -
Vimu8g01746 578 Gene3D eRF1 domain 1 2 135 IPR024049 -
Vimu8g01746 578 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Vimu8g01746 578 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 5 429 IPR004403 GO:0003747|GO:0006415
Vimu8g01746 578 Pfam eRF1 domain 2 144 277 IPR005141 -
Vimu8g01746 578 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Vimu8g01746 578 SMART eRF1_1_2 4 140 IPR005140 -
Vimu8g01746 578 Gene3D eRF1 domain 2 136 277 IPR042226 -
Vimu8g01746 578 SUPERFAMILY Translational machinery components 142 276 - -
Vimu8g01746 578 FunFam Eukaryotic peptide chain release factor subunit 1 136 277 - -
Vimu8g01746 578 Pfam eRF1 domain 3 281 418 IPR005142 -
Vimu8g01746 578 NCBIfam peptide chain release factor aRF-1 13 417 IPR004403 GO:0003747|GO:0006415
Vimu8g01746 578 SUPERFAMILY L30e-like 278 420 IPR029064 -
Vimu8g01746 578 Gene3D - 279 433 IPR029064 -
Vimu8g01746 578 Pfam eRF1 domain 1 18 138 IPR005140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01746 Vimu-Chr8 23328795 23330885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01746 1 428 Eukaryotic Initiation Factors Gene Family AT3G26618 90.187 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01746 K03265 - gmx:100785916 832.017