Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01737 ATGGTGATAGTAGGTTTGCCTGTTGTTTTTGGATTGTTAATCACGAACTTGAGTTCCATGTGTGTAGTTTCCGTTATGGGTAGAAAGAAAAGAACTGAAGGAGGACCTAGTGGGGGTGAAAGCTCTGAGCCTCAACGCCCTGCTGAAAGAAGTGCACCGCCCCAACAACAGGCTTCTGCCCCTGGTGGGACTGGACCCCAAGGAGGAGGTAGAGCCTGGGGTCCCCAAGGAGGGCGAGGAGGTTATGGTGGAGGCCGTGGCCGTGGGATGCCTCAGCAACAATATGGCATCCCCCAACAGCAATATGGTGCCCCAGCTGATTATCAAGGTAGGGGACGTGGAGGGTCTTCTCAGCAAGGAGGCCGTGGGGGATATGGTGGTGGCCGCAGTGGTGGTGTTGGCGGCGGTGGCCGAGGAATAGGTCCTTCATATGGTGGCTCTTCTAGGCCACCAGTACCCGAGCTGCACCAAGCAACCTCAGTTCAATCATATCAAACTGGGGTGAGTCCTCAGCCTACATCATCTGAGGCGAGTTCTTCCCTGCCGCCTGAACCGGTGGATTTGGAGCCATCGGTGGGGCAGATGGTGATTGCTGAAGCTACTCCTACCCCTCCTCCTCAAAGTAAATCATCCATGAGGTTTCCCCTCCGACCTGGGAAGGGTAGCTATGGCATAAAATGCATTGTTAAGGCTAATCATTTCTTTGCGGAGTTACCTAACAAAGATCTTCATCAATATGACGTAACCATTACTCCAGAAGTGACGTCTAGAGGTGTGAACCGTGCTGTTATGGAGCAATTGGTCAGGCTTTATCGGGAATCTCACTTGGGGAAGAGGCTTCCTGCCTATGATGGACGCAAAAGCCTCTATACTGCTGGGCCCTTGCCATTTATTTCAAAGGAGTTTAGAATTACTCTTATTGATGATGATGAAGGAGCAGCAGGAGGACAGAGGAGGGACCGAGAGTTCAAGGTGGTGATTAAGTTGGCTGCACGGGCAGACCTTCACCATTTAGGGCTGTTTTTACAAGGAAGGCAGACTGATGCGCCACAAGAGGCTTTGCAGGTCCTTGACATTGTACTGCGTGAACTCCCCACTACAAGGTATTGTCCTGTAGGAAGATCATTTTATTCACCCGATCTTGGAAGAAGACAGCCTTTAGGTGAGGGATTGGAGAGCTGGCGTGGTTTCTACCAGAGTATTCGTCCAACTCAGATGGGGTTGTCACTAAATATTGATATGTCCTCCACTGCTTTTATTGAGCCACTGCCAGTTATAGATTTTGTTACCCAATTGCTGAATAGAGATGTTTCTGCTCGACCTCTGTCTGATGCTGATCGAGTGAAGATCAAGAAAGCTCTCCGAGGGATCAAAGTTGAAGTAACACACAGAGGAAATATGAGAAGAAAATACCGAATTTCTGGCCTGACTTCTCAGGCAACAAGAGAGTTGACGTTCCCTGTAGATGAAAGAGGAACTATGAAATCTGTTGTGGAGTACTTCTATGAGACATATGGGTTTGTCATTCAGCATACTCAGTGGCCTTGTCTGCAAGTAGGGAATACACAAAGGCCAAACTATTTGCCAATGGAGGTATGCAAGATTGTGGAAGGGCAGAGATATTCTAAGAGGTTGAATGAGAGACAGATCACCGCTCTTCTGAAAGTTACATGCCAGCGTCCTGTTGAGAGGGAGCGTGATATCATGCAGACTGTATATCACAATGCATACCATGAAGATCCTTATGCCCAAGAGTTTGGAATCAAAATTAGCGAGAAGCTTGCTCAAGTTGAAGCACGCATTCTACCTGCACCCTGGCTCAAATATCATGATACAGGTAGAGAGAAGGATTGTCTTCCTCAAGTTGGGCAGTGGAATATGATGAATAAGAAAATGGTTAATGGGGGTACTGTTAACCATTGGTTCTGCATCAATTTTTCAAGGAGTGTTCAGGATAGCGTTGCCCGTGGCTTTTGCTATGAACTTGCTCAGATGTGCTATATATCTGGCATGGCATTTAATCCGGAGCCAGTTGTCCCACCAGTCAGTGCTCGCCCTGATCAGGTGGAGAAAGTTCTAAAAACCCGTTATCATGATGCAAAGAATAAGCTTCAGGGAAGGGAGCTTGATTTGCTCATTGTTATTTTACCTGACAATAATGGATCTCTTTATGGTGATCTCAAACGTATATGTGAGACAGATCTTGGACTAGTTTCACAATGTTGTTTGACTAAGCACGTCTTTAAAATGAGCAAGCAGTACCTCGCAAATGTGGCATTGAAAATTAATGTTAAAGTGGGAGGGAGAAACACTGTACTTGTTGATGCACTTTCACGGCGCATCCCCTTGGTTGGAGACAGACCCACTATTATTTTTGGAGCTGATGTGACTCATCCACATCCTGGAGAGGATTCAAGCCCATCAATTGCAGCTGTTGTGGCTTCCCAAGATTATCCGGAAATTACAAAGTATGCTGGTTTAGTCTGCGCCCAAGCTCATAGACAGGAACTCATTCAGGACCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATCAAAGAACTTCTTATATCTTTTAGGAGGGCTACGGGACAGAAGCCACAACGCATTATATTTTACAGGGATGGTGTCAGTGAAGGTCAATTTTACCAAGTTCTACTGTTTGAACTTGATGCTATTCGAAAGGCATGCGCATCCCTTGAACCCAACTATCAACCTCCTGTTACATTTGTTGTGGTTCAAAAGCGTCATCACACGAGGCTCTTTGCTAGCAACCATCATGACAAGAGTTCTGTTGACAGGAGTGGCAACATATTGCCTGGCACAGTTGTCGATTCCAAAATCTGTCATCCAACAGAATTTGACTTTTATCTTTGTAGCCATGCTGGAATACAGGGTACCAGCCGTCCTGCTCACTATCACGTGTTGTGGGATGAAAACAATTTTACTGCAGATGCTTTGCAAACTCTTACTAACAACCTTTGCTACACATATGCTAGATGCACACGATCTGTTTCAATTGTGCCTCCTGCATATTATGCCCACTTGGCTGCTTTCCGTGCAAGATTTTACATGGAACCAGAGACGTCCGATAGTGGGTCCATGACGAGTGGTGCAGTTGCTGGCCGTGGAATGGGTGGCGGTATTGGTCGAAGCACCCGAGCACCTGGAGCTAATGCTGCTGTGAGACCACTACCTGCTCTGAAGGAGAATGTGAAGAGGGTTATGTTTTATTGTTAA 3258 0.4665 MVIVGLPVVFGLLITNLSSMCVVSVMGRKKRTEGGPSGGESSEPQRPAERSAPPQQQASAPGGTGPQGGGRAWGPQGGRGGYGGGRGRGMPQQQYGIPQQQYGAPADYQGRGRGGSSQQGGRGGYGGGRSGGVGGGGRGIGPSYGGSSRPPVPELHQATSVQSYQTGVSPQPTSSEASSSLPPEPVDLEPSVGQMVIAEATPTPPPQSKSSMRFPLRPGKGSYGIKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLIDDDEGAAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVYHNAYHEDPYAQEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRSVQDSVARGFCYELAQMCYISGMAFNPEPVVPPVSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVGDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGIGRSTRAPGANAAVRPLPALKENVKRVMFYC 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01737 1085 CDD PAZ_argonaute_like 422 536 - -
Vimu8g01737 1085 MobiDBLite consensus disorder prediction 29 188 - -
Vimu8g01737 1085 MobiDBLite consensus disorder prediction 153 181 - -
Vimu8g01737 1085 Pfam N-terminal domain of argonaute 227 361 IPR032474 -
Vimu8g01737 1085 Gene3D paz domain 416 541 - -
Vimu8g01737 1085 MobiDBLite consensus disorder prediction 48 63 - -
Vimu8g01737 1085 Gene3D - 780 1085 IPR036397 GO:0003676
Vimu8g01737 1085 Pfam Mid domain of argonaute 620 695 IPR032473 -
Vimu8g01737 1085 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 206 1033 - -
Vimu8g01737 1085 SMART Piwi_a_2 711 1032 IPR003165 GO:0003676
Vimu8g01737 1085 SMART PAZ_2_a_3 427 559 IPR003100 GO:0005515
Vimu8g01737 1085 Gene3D - 601 774 - -
Vimu8g01737 1085 Pfam Piwi domain 712 1031 IPR003165 GO:0003676
Vimu8g01737 1085 FunFam Protein argonaute-2 416 542 - -
Vimu8g01737 1085 Pfam PAZ domain 427 552 IPR003100 GO:0005515
Vimu8g01737 1085 FunFam protein argonaute 10-like 780 1085 - -
Vimu8g01737 1085 Pfam Argonaute linker 1 domain 371 421 IPR014811 -
Vimu8g01737 1085 Pfam Glycine-rich region of argonaut 103 195 IPR024357 -
Vimu8g01737 1085 Pfam Argonaute linker 2 domain 563 609 IPR032472 -
Vimu8g01737 1085 SMART DUF1785_2 370 422 IPR014811 -
Vimu8g01737 1085 SUPERFAMILY Ribonuclease H-like 697 1032 IPR012337 -
Vimu8g01737 1085 FunFam Argonaute 10 601 774 - -
Vimu8g01737 1085 SUPERFAMILY PAZ domain 228 577 IPR036085 GO:0005515
Vimu8g01737 1085 CDD Piwi_ago-like 581 1031 IPR045246 -
Vimu8g01737 1085 ProSiteProfiles PAZ domain profile. 423 537 IPR003100 GO:0005515
Vimu8g01737 1085 ProSiteProfiles Piwi domain profile. 711 1032 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01737 Vimu-Chr8 23227366 23235438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01737 107 1085 Eukaryotic Initiation Factors Gene Family AT1G48410 82.049 0.0 1626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01737 K11593 - gmx:100780375 1835.46