Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01736 ATGGTTGTGATGAGTGAAAACACTTTAGCAGAAGCTACAACAACAACAGAAGAAGAGAAAAAATGTCACCGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCCAGTAGAGATCCAGAGTGGTACTTTTTTGGACCCCGGGATAGGAAATACCCGAATGGGTTTAGAACAAATAGAGCAACTCGTGCAGGGTACTGGAAGTCCACTGGAAAAGATAGGAAAGTTTCCTGCCAAAGCAGACCCATTGGCATGAAGAAGACTTTGGTGTACTATAGAGGCAGAGCTCCTCAAGGAATCAGAACTGATTGGGTAATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAAGACACCACTGGATTACAGGATACTTATGCATTGTGCCGGGTGTTCAAGAAAAATGGAATCTGTTCTGAGATTGAAGAGCAAGGACAATGTAGTATATCACTCATTGAGAGCTGCCAAACCATGATTAATGAGTGTGAAACCATGTCTCCTGACATACCAGGCGCATCATCATCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 753 0.4157 MVVMSENTLAEATTTTEEEKKCHRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRKVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSISLIESCQTMINECETMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEELSHVTFTN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01736 250 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 191 - -
Vimu8g01736 250 Gene3D NAC domain 28 172 IPR036093 GO:0003677|GO:0006355
Vimu8g01736 250 Pfam No apical meristem (NAM) protein 23 146 IPR003441 GO:0003677|GO:0006355
Vimu8g01736 250 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vimu8g01736 250 SUPERFAMILY NAC domain 22 170 IPR036093 GO:0003677|GO:0006355
Vimu8g01736 250 FunFam Nac domain-containing protein 86 28 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01736 Vimu-Chr8 23191849 23195444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01736 24 239 NAC Transcription Factor Family AT3G17730 75.758 1.13e-125 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g01736 NAM 8.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01736 - - gmx:100784495 472.626