Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu8g01734 | ATGGCTAACATGGTCTTTGTTGGTGTTAAGGTAGCTGCTGTTTCTCTACCACCATTACCCATTACAAACAATGCTCTGAGTTTCAGTTTCACCCAGAAGAGACACTTCCTTCTTCTGAATTGTTCCCGAACCAATAACAGAACAACGTCTTTCTCTTCTTCCTTCTCAATCTCGTCATCACCTCTCACAAACAAGGGTGGTTGTTCTGTGTTGGCGTGTCTCCCTCCTGCTTCGTCTGAATCCTCAACCTCATCATCTGCCACTGCTAAACCCTCTTCCAATTTCCCTTCAACTAAGCTTTATGTCAGTGGGCACTTTGATGTGCCTCATATACTAGCTATGATTGCTCTTGATGCAATGGTCATTTGCCATATGTTGCTAAAGTCTACAGATTGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAGTTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTACGCAACTGAAGAAGAATCTCAGAAGGCTATGGAGGGTATGCATGGAAAGTTTTTGGATGGTAGGGTCATATTTGTTGAAGTTGCCAAACCGAGATCAGAGCTACCGCCGCGAAACAGGGAAGGCACAAGATTGTAA | 657 | 0.4323 | MANMVFVGVKVAAVSLPPLPITNNALSFSFTQKRHFLLLNCSRTNNRTTSFSSSFSISSSPLTNKGGCSVLACLPPASSESSTSSSATAKPSSNFPSTKLYVSGHFDVPHILAMIALDAMVICHMLLKSTDWLSFRTTEESLRNAFKSFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAMEGMHGKFLDGRVIFVEVAKPRSELPPRNREGTRL | 218 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu8g01734 | 218 | PANTHER | NUCLEOLAR PROTEIN 8 | 79 | 209 | - | - | |
Vimu8g01734 | 218 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 204 | IPR000504 | GO:0003723 | |
Vimu8g01734 | 218 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 197 | IPR000504 | GO:0003723 | |
Vimu8g01734 | 218 | Gene3D | - | 73 | 213 | IPR012677 | - | |
Vimu8g01734 | 218 | SMART | rrm1_1 | 133 | 200 | IPR000504 | GO:0003723 | |
Vimu8g01734 | 218 | SUPERFAMILY | RNA-binding domain, RBD | 133 | 213 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu8g01734 | Vimu-Chr8 | 23182734 | 23184946 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu8g01734 | 133 | 207 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.000 | 2.07e-06 | 45.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu8g01734 | - | K13195 | gmx:100305561 | 225.328 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu8g01734 | 8 | 23182734 | 23184946 | Vimu8g01734 | 8 | 23182734 | 23184946 | ECH |