Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01734 ATGGCTAACATGGTCTTTGTTGGTGTTAAGGTAGCTGCTGTTTCTCTACCACCATTACCCATTACAAACAATGCTCTGAGTTTCAGTTTCACCCAGAAGAGACACTTCCTTCTTCTGAATTGTTCCCGAACCAATAACAGAACAACGTCTTTCTCTTCTTCCTTCTCAATCTCGTCATCACCTCTCACAAACAAGGGTGGTTGTTCTGTGTTGGCGTGTCTCCCTCCTGCTTCGTCTGAATCCTCAACCTCATCATCTGCCACTGCTAAACCCTCTTCCAATTTCCCTTCAACTAAGCTTTATGTCAGTGGGCACTTTGATGTGCCTCATATACTAGCTATGATTGCTCTTGATGCAATGGTCATTTGCCATATGTTGCTAAAGTCTACAGATTGGTTATCATTTCGTACCACTGAAGAAAGTTTGCGAAATGCTTTTAAGAGTTTTGGTCAACTCGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTACGCAACTGAAGAAGAATCTCAGAAGGCTATGGAGGGTATGCATGGAAAGTTTTTGGATGGTAGGGTCATATTTGTTGAAGTTGCCAAACCGAGATCAGAGCTACCGCCGCGAAACAGGGAAGGCACAAGATTGTAA 657 0.4323 MANMVFVGVKVAAVSLPPLPITNNALSFSFTQKRHFLLLNCSRTNNRTTSFSSSFSISSSPLTNKGGCSVLACLPPASSESSTSSSATAKPSSNFPSTKLYVSGHFDVPHILAMIALDAMVICHMLLKSTDWLSFRTTEESLRNAFKSFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAMEGMHGKFLDGRVIFVEVAKPRSELPPRNREGTRL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01734 218 PANTHER NUCLEOLAR PROTEIN 8 79 209 - -
Vimu8g01734 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 204 IPR000504 GO:0003723
Vimu8g01734 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 197 IPR000504 GO:0003723
Vimu8g01734 218 Gene3D - 73 213 IPR012677 -
Vimu8g01734 218 SMART rrm1_1 133 200 IPR000504 GO:0003723
Vimu8g01734 218 SUPERFAMILY RNA-binding domain, RBD 133 213 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01734 Vimu-Chr8 23182734 23184946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01734 133 207 Eukaryotic Initiation Factors Gene Family AT4G34110 28.000 2.07e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01734 - K13195 gmx:100305561 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01734 8 23182734 23184946 Vimu8g01734 8 23182734 23184946 ECH