Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01732 ATGGAGTATGGAAGTGGGTCTCCTGGTGATCTCCATCATCACCATGATGGTTCTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCCAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAACGGATGCAGTTAAGTAGGGAGTTAGGCTTGGCACCTAGACAGATCAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCGGATAATTCTGCACTCCGGCAAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAGGCCTTGAAAAACGTTATCTGCCCTTCTTGTGGTGGTCCTCCCATCAATGACGATTGTTATTTTGATGAGCAAAAGTTGAGATTGGAGAATGCTCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCAGCCAAGTACATCGGAAGGCCAATTTCTCAGCTCCCACCTGTTCAACCTATTCATATATCTTCTCTAGACCTGTCAATGGGGAGTTTTGCAAGCCAAGGGTTGGGTGGTCCTTCACTTGATCTTGATCTTCTCCCTGGGAGTTCATCGTCCATGCCAAATGTGCCTCCTTTCCAACCCGCATGTCTTTCAGACATGGATAAGTCCCTCATGTCGGACATTGCCTCAAATGCCATGGAAGAAATGATCAGGCTACTGCAAACAAACGAGCCCTTGTGGATGAAAGGTCCAGATGGGAGGGATGTCCTTGATCTTGATACCTATGAAAGAATGTTCCCCAAGGCTAATGGTCACATGAAGAACCCCAATGTTCACGTTGAAGCTTCAAGAGATTCAGGAGTTGTCATTATGAATGGCTTAACCTTGGTTGACATGTTCATGGACCCGATGTATGAGGAGTTGCAAGTGCTCTCTCCACTTGTTTCTACCAGAGAGTTCTACTTCCTGCGTTACTGTCAGCAAATTGAACAAGGCTTATGGGCAATAGTAGATGTTTCGTATGATTTTCCTCAAGACAACCAATTTGCTCCTCAGTTTCGATCTCATCGTCTGCCTTCTGGTGTCTTTATTCAAGACTTGCCTAATGGATACTCCAAGGTTACCTGGATTGAACATGTAGAGGTTGAAGACAAAACACCAGTTCATAGGCTCTACAGAAGCATGATTTATAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGAATTGCTTGTCTTATGGTGACAAGCAATTCCACCCGCGATCTTGGGGGAGTGATTCCCTCACCTGAGGGGAAGAGAAGCATGATGAAACTTGCACAAAGAATGGTTACCAATTTTTGTGCAAGCATCAGTGCATCAGCTGGGCACCGATGGACCACACTCTCTGGTAGTGGGATGAATGAGATTGGAGTGAGAGTCACTGTGCATAAGAGCACAGACCCTGGCCAACCTAATGGTGTCGTGCTAAGTGCAGCCACCACCATTTGGCTCCCAATCCCTCCGCAAACATGGGATGCTTTCAACACAAGTCAAAACAACATGCTGATCCTCCAAGAGAGCTGTGTGGATTCATCAGGGTCACTAGTGGTGTATTGTCCAGTTGATCTTCCAGCCATAAACATAGCAATGAGTGGTGAAGACCCTTCATACATTCCGCTCCTTCCATCAGGGTTCACGATCTCACCAGATGGACAAGGTGAGCAAGATGGTGGAGGAGCCTCAAGCAGCACAAGCTCAGGTAGGGTGATGGGGGGGTCTGGGGGATCACTCATCACTGTTGCATTCCAAATCCTAGTTAGCAGCTTACCATCTGCAAAACTGAACTTTGAGTCTGTGACGACTGTTAATAGCCTCATCGGCAACACTGTCCAGCAAATAAAAGCTGCCTTGAATTGTCCAAGTTCCTGA 1923 0.467 MEYGSGSPGDLHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRQENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFASQGLGGPSLDLDLLPGSSSSMPNVPPFQPACLSDMDKSLMSDIASNAMEEMIRLLQTNEPLWMKGPDGRDVLDLDTYERMFPKANGHMKNPNVHVEASRDSGVVIMNGLTLVDMFMDPMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGVFIQDLPNGYSKVTWIEHVEVEDKTPVHRLYRSMIYSGIAFGAQRWLTTLQRMCERIACLMVTSNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASAGHRWTTLSGSGMNEIGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTWDAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQGEQDGGGASSSTSSGRVMGGSGGSLITVAFQILVSSLPSAKLNFESVTTVNSLIGNTVQQIKAALNCPSS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01732 640 Gene3D - 11 99 - -
Vimu8g01732 640 MobiDBLite consensus disorder prediction 566 586 - -
Vimu8g01732 640 CDD START_ArGLABRA2_like 218 412 - -
Vimu8g01732 640 MobiDBLite consensus disorder prediction 1 32 - -
Vimu8g01732 640 CDD homeodomain 24 83 IPR001356 GO:0003677
Vimu8g01732 640 SUPERFAMILY Bet v1-like 434 632 - -
Vimu8g01732 640 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Vimu8g01732 640 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Vimu8g01732 640 SMART START_1 223 413 IPR002913 GO:0008289
Vimu8g01732 640 Gene3D - 288 415 IPR023393 -
Vimu8g01732 640 MobiDBLite consensus disorder prediction 7 23 - -
Vimu8g01732 640 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 299 IPR042160 -
Vimu8g01732 640 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Vimu8g01732 640 SUPERFAMILY Bet v1-like 215 414 - -
Vimu8g01732 640 Coils Coil 130 150 - -
Vimu8g01732 640 ProSiteProfiles START domain profile. 214 416 IPR002913 GO:0008289
Vimu8g01732 640 SUPERFAMILY Homeodomain-like 5 82 IPR009057 -
Vimu8g01732 640 SMART HOX_1 23 86 IPR001356 GO:0003677
Vimu8g01732 640 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Vimu8g01732 640 Pfam START domain 300 413 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01732 Vimu-Chr8 23149655 23154008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01732 20 640 Homeobox Transcription Factor Family AT1G73360 59.033 0.0 786
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu8g01732 START 6.5e-34 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01732 K09338 - gmx:100809075 1135.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01732 8 23149655 23154008 Vimu8g01732 8 23149655 23154008 ECH
Vimu11g04971 11 69009087 69012046 Vimu8g01732 8 23149655 23154008 PCT