LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g01732	ATGGAGTATGGAAGTGGGTCTCCTGGTGATCTCCATCATCACCATGATGGTTCTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCCAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAACGGATGCAGTTAAGTAGGGAGTTAGGCTTGGCACCTAGACAGATCAAGTTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCGGATAATTCTGCACTCCGGCAAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAGGCCTTGAAAAACGTTATCTGCCCTTCTTGTGGTGGTCCTCCCATCAATGACGATTGTTATTTTGATGAGCAAAAGTTGAGATTGGAGAATGCTCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCAGCCAAGTACATCGGAAGGCCAATTTCTCAGCTCCCACCTGTTCAACCTATTCATATATCTTCTCTAGACCTGTCAATGGGGAGTTTTGCAAGCCAAGGGTTGGGTGGTCCTTCACTTGATCTTGATCTTCTCCCTGGGAGTTCATCGTCCATGCCAAATGTGCCTCCTTTCCAACCCGCATGTCTTTCAGACATGGATAAGTCCCTCATGTCGGACATTGCCTCAAATGCCATGGAAGAAATGATCAGGCTACTGCAAACAAACGAGCCCTTGTGGATGAAAGGTCCAGATGGGAGGGATGTCCTTGATCTTGATACCTATGAAAGAATGTTCCCCAAGGCTAATGGTCACATGAAGAACCCCAATGTTCACGTTGAAGCTTCAAGAGATTCAGGAGTTGTCATTATGAATGGCTTAACCTTGGTTGACATGTTCATGGACCCGATGTATGAGGAGTTGCAAGTGCTCTCTCCACTTGTTTCTACCAGAGAGTTCTACTTCCTGCGTTACTGTCAGCAAATTGAACAAGGCTTATGGGCAATAGTAGATGTTTCGTATGATTTTCCTCAAGACAACCAATTTGCTCCTCAGTTTCGATCTCATCGTCTGCCTTCTGGTGTCTTTATTCAAGACTTGCCTAATGGATACTCCAAGGTTACCTGGATTGAACATGTAGAGGTTGAAGACAAAACACCAGTTCATAGGCTCTACAGAAGCATGATTTATAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGAATTGCTTGTCTTATGGTGACAAGCAATTCCACCCGCGATCTTGGGGGAGTGATTCCCTCACCTGAGGGGAAGAGAAGCATGATGAAACTTGCACAAAGAATGGTTACCAATTTTTGTGCAAGCATCAGTGCATCAGCTGGGCACCGATGGACCACACTCTCTGGTAGTGGGATGAATGAGATTGGAGTGAGAGTCACTGTGCATAAGAGCACAGACCCTGGCCAACCTAATGGTGTCGTGCTAAGTGCAGCCACCACCATTTGGCTCCCAATCCCTCCGCAAACATGGGATGCTTTCAACACAAGTCAAAACAACATGCTGATCCTCCAAGAGAGCTGTGTGGATTCATCAGGGTCACTAGTGGTGTATTGTCCAGTTGATCTTCCAGCCATAAACATAGCAATGAGTGGTGAAGACCCTTCATACATTCCGCTCCTTCCATCAGGGTTCACGATCTCACCAGATGGACAAGGTGAGCAAGATGGTGGAGGAGCCTCAAGCAGCACAAGCTCAGGTAGGGTGATGGGGGGGTCTGGGGGATCACTCATCACTGTTGCATTCCAAATCCTAGTTAGCAGCTTACCATCTGCAAAACTGAACTTTGAGTCTGTGACGACTGTTAATAGCCTCATCGGCAACACTGTCCAGCAAATAAAAGCTGCCTTGAATTGTCCAAGTTCCTGA	1923	0.467	MEYGSGSPGDLHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNSALRQENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFASQGLGGPSLDLDLLPGSSSSMPNVPPFQPACLSDMDKSLMSDIASNAMEEMIRLLQTNEPLWMKGPDGRDVLDLDTYERMFPKANGHMKNPNVHVEASRDSGVVIMNGLTLVDMFMDPMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGVFIQDLPNGYSKVTWIEHVEVEDKTPVHRLYRSMIYSGIAFGAQRWLTTLQRMCERIACLMVTSNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASAGHRWTTLSGSGMNEIGVRVTVHKSTDPGQPNGVVLSAATTIWLPIPPQTWDAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQGEQDGGGASSSTSSGRVMGGSGGSLITVAFQILVSSLPSAKLNFESVTTVNSLIGNTVQQIKAALNCPSS	640

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vimu8g01732	640	Gene3D	-	11	99	-	-
Vimu8g01732	640	MobiDBLite	consensus disorder prediction	566	586	-	-
Vimu8g01732	640	CDD	START_ArGLABRA2_like	218	412	-	-
Vimu8g01732	640	MobiDBLite	consensus disorder prediction	1	32	-	-
Vimu8g01732	640	CDD	homeodomain	24	83	IPR001356	GO:0003677
Vimu8g01732	640	SUPERFAMILY	Bet v1-like	434	632	-	-
Vimu8g01732	640	ProSitePatterns	'Homeobox' domain signature.	57	80	IPR017970	GO:0000981\|GO:0006355
Vimu8g01732	640	ProSiteProfiles	'Homeobox' domain profile.	22	82	IPR001356	GO:0003677
Vimu8g01732	640	SMART	START_1	223	413	IPR002913	GO:0008289
Vimu8g01732	640	Gene3D	-	288	415	IPR023393	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g01732	Vimu-Chr8	23149655	23154008	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g01732	20	640	Homeobox Transcription Factor Family	AT1G73360	59.033	0.0	786

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Vimu8g01732		START	6.5e-34	CL0209

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g01732	K09338		-	gmx:100809075	1135.94

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu8g01732	8	23149655	23154008	Vimu8g01732	8	23149655	23154008	ECH
	Vimu11g04971	11	69009087	69012046	Vimu8g01732	8	23149655	23154008	PCT

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