Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01725 ATGTTGTCGGATACAGATGCACAACCATATGACGAACCTTCGGATTCTAAATTCCGAAGGATGGTAACCAGGACTCAAAGCGCTTCAATTTCTATTCCCATGAGCTCCTTGGAGTCATATGAGAAAGAAACTAGTCTTGTGGGACATACTGGTCCACTTCTGAGCAAGAGAAAAACACCCTATATGCATATGAGTGGTCCATTATATGCTACCACTGGAACTGGAAATCTTTTGCAGAAGCATGTTGTATCGGGAAATAAAGCAGATGACAGAAAGACAGATAATTTTGCTACTCTCCATGGCTCAAGTTCAAATTACCAAAATAGTGACTATGATAGAAAAAATGAACACTTACTAAGGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCTCAGCAAAGAAATCCAAAATCTTCTGCTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTGAGGAAACTTCCTTCTTTCTTTTCTTCTTATGTTCCTGGAGTTATGAACCCTCACGCTAAAGTTGTACAAAAGTGGAGCAAATTTTTGGCCATTTTTTGCTTAATTGGTATTTTTGTGGACCCATTGTTTTTCTTTTCACTCTATGTGGAGAAGGTGAATAAATGCATTGTTATCAACTGGCCATTGGCAACAACACTTGCTTTAGTTAGATGCGTGAATGATTTTGTTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGACCATCCAAAGAAAATTGCTCTTCATTACCTAAAGGGTTATTTCCTCATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGTTATTATTTGTCCTACCAAATTCCTTGTGGGGAGCAAATTATGCTAAGAATCTTCTGCGTGCAGCAATATTAGTGCAATATTTTCCCAAATTATTCAGGTTTCTGCCACTGCTGATCGGCCAATCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTTATTATAAATCTTCTCATTTTTATGCTTGCTAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTTAACCAGTGTTTGCGGAATGCCTGTCATAACTCTACTATACCTGGATGCATGAAGTTCATTGATTGTGGACGTGGTCATCCAAATTTCACATCAAATCCGTGGATCAACAATACTGATGCTGTTGCTTGTATGGATTCTTCCGGTTTCACTTATGGGATTTATCAGTCTGCTGTACCACTTACTATAGAAACTAATGTAGTCAACAAATACGTGTACTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCTAATTCCTAGCTATTTTGAGTGGGAAGTCCTTTTTACTATGGCCATCATAGGATCAGGACTCTTACTTTTTGCAATTCTCATTGGTAACATACAGAACTTTCTACAGGCTCTTGGACGGAGGAAACTGGAAATGCAACTTAGAGGTCGCGATGTTGAGCAATGGATGAGCCATCGGCGATTACCTGATGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTACAGTTGGGCTGCCACAAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTGCAGAGAGACATAAGACGCCATCTCTTCAAATTTGTTAAGAAAATTCGGATTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACACACATTAAAGGAAGTAAAATTCTAAGTCATGGCTGTCTAGTAGAAAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATTGGAGAAGATGGAACCAGAATTCCTCTATCTGAAGGGGATGCATGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTCAGCAACAGGACAGTAAGCATGGCTAGTTTTGAAAATGGTGAGCTGCAGAAGATACCAGAAGAAACTGATGCACAACCATATCATGAAACTTTGCATTCTAAATTTCAAAGGCTTTTATCCGGGAAACAAAGTGCATCAGTTTCTATTCCCATGGAGTCATATGAGGTAGAAACTAGTCTCGTGGGAGATAGTGGTTCTTTATATGCTACATCAGAAACTGATAATGTTATGCAGCATAGTATAGTTGTAACAGGAAACAAAACACAGGAGAGCACAGATGAATTTTCTACTTTTGACAGCACGGCTTCAAAGTACTGGCATAAAAGCTATGATAGCATAAATGAACATTTACTGAGATCTGGGAAACTGGGAATTTGTAATGATCCTTATTGTACTACTTGTCCTTCTTACTTCAAGTCTTCTCAGCTAAGAAATCCAAAAGCTTGTAATATATCTGATCCGAAGTTTCAGAATGCTCTTAATGGGGATGCCAGACTATTTGCCAGAAAATTTTGTTCTCTATGTTCATCTTTTGTTCCTGGAGTTATGAATCCTCACTCTAAATTCATACAACATTGGAACAAGGTTCTTGCCAGTTTTTGCTTGGCTGCAATTTTTGTGGATCCATTATTTTTCTTCTTACTCTATGTTCGGCAGGATCATAATTGTATAGTTATCAACTGGAAATTGACAAAAGCACTTGTTATAGTTAGAACCATGAATGACTTCATATATTTCCTTCACATTCTTCTCCAGTTTAGGTTGGCTTTTGTTTCTCCTGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCAAAAGAAATTGCATTTCATTACCTGAAGGGTTATTTTCTTATTGACTTGTTTGTTGTATTTCCTCTTCCTCAGTCTCCAGCAGGATTCATATTTGAGTCAGCATGGGCAAATTTCATCATAAATCTTCTCATTTTCATTCTATCTAGCCATGTTGTTGGCTCTATCTGGTACCTATTTGCTCTACAGAGGGTTAATCAATGTTTTCGAAATGCGTGCCAAAGTTCTAATATACCTGGATGCCTGGCATTCATTGATTGTGGACACAGCCAAGTTGGGGACAATCAGCTTGTCTTATCATCAAACCAGTGGAACAACAATGCAGATGCTATTGCATGTTGGAATTCCTCTTCCAGCGGTTCTTTTTCTTATGGGATTTATAACAATGCTGTACCTCTTACTACACAAACAGACATCGTCACCAAATACATATATGCTCTATTTTGGGGATTACAGCAAATCAGTACTCTGGCTGGTAACCAAACACCAAGCGACTTTGTGTTTGAAACCCTTTTTACTATAGCCATCATAGGATTGGGACTTTTGCTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAAGGTCTTGGACGGAGGAGGCTAGATTTGCAACTTAGACGCGGTGATGTTGAGCAATGGATGAGTCATAGGCGCTTGCCAGAATACCTCAGAAGGAGAGTACGAGAGGCTGAACGGTATAGTTGGACTGCAACAAGGGGGGTGAATGAAGCAACGCTAATGGAGAATTTTCCAGAAGATCTCCAAGTGGATATAAGACGCCATCTCTTCAAATTTGTTAAGGAAGTTCGAATATTTGCTCTGATGGATGAACCTGTCTTAGATGCCATATGTGCAAGACTGAGACAAACTACTTACATTAAAGGAAGTAGAATTTTGAGTCAAGGTAGTGTGGTAGAGAAGATGGTATTCGTGGTGCGTGGTAAATTGGAGAGCATAGGAGAAGATGGTACTAGAATTCCTTTATCTGAAGGGGATGTTTGTGGTGAAGAACTTCTGACATGGTATCTTGAGCACTCTTCTGTCAGCGCAGATGGCAGAAGAGTAAGGCTTCCAGGACAGAAGTTGCTTAGCAACAGAACAGTAAGATGCTTAACAAATGTGGAAGTACTTTCACTCCGAGCAGAAAACCTTCAAGAAGTCACAATCCTTTTTACAAGATTCTTGCGTAGTTTGCGTGTTCAAGGAGCCTTAAGGTATGAATCACCTTATTGGAGATCGCTTGCAGCAATCCGCATTCAGGGAAACATGGCTCGTTTTGAAAAAGATGAGGTTCCTATGCTGTCTGAAACGCGTGCTCAACTATCTGATGAATTCGTGGATTCTAATTTCCGGAGGCTAGTATCTAGAACACGAAGTGCTTCAATTTCGATTCCCATGGCTTCCTTGGAATCATATGAGAAAGAAACTAGTCTTGTGGGACATACCGGTCCCCTTCGTAGTGTGAGAAAAACCCCCTTTGTGCAGATGAGTGGTCCACTGTATGCTACGCATGGAACTTCAAATATTTCAGGACAGAATATACCTGCTACAGGAAACAAAGTAGTGGAAAGCAAGACAGAAAACTTTTCTACTTTTAGTGGCACAAATGAAAATCGTTGGGATAATGACTATGACAGAAAGAATGAACACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTGCTCAACCAAGAACTCGAAAAACTTCAGCTATATTTGATCCCAAGTTCCACCATGTTTTTTATGGAGATGCCAAGGGTTTTGGCCGAAAATTTTTTTCCTTCTGCTATTCATATGTTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTACAACAATGGAACAAGATCTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTTGATCCATTATTTTTCTTCTTAATATATGTGAAGGAGTTTAGGCTGGCTTATGTTTCTCCTGAGTCAATGGTAGTAGGTGCTGGAGATTTAGTTGACCAACCCAAGAAAATTGCTCTTAATTATCTGAAGAGTTATCTTTTTATCGACCTATTTGTTGTATTTCCTCTTCCTCAGGTAATGATATTATCTGTCCTACCAAACTACCTGGGATCATCTGGAGCAAATTATGCTAAAAATCTTCTGCGTGCAGCAATCCTTGTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATTGGCCAGTCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTGTTATGCTATCTGGCCATGTTGTTGGTTCTTTCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAAATGCCTGCCACGATTCTAATATTCGTGGATGCTCAACATTTATTGATTGTGGTCGTTCATCTGGCCGTAAGTCAGATATATGGAGCGAAAATGTGAATGCCTCTGCATGTTTGAATGCCAGTTCCGGTGCTTTTCAATATGGAGTCTATGTAAACGCTGTAGCACTTACTACAGAAACTAGGGTGGTCAACAAATATGTATTTGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTCTAGCTGGTAATCAAACCCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACGATGGCCATCATAGGTTTGGGACTCTTACTTTTTGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAACAATGGATGAGCCACCGTCGCTTGCCAGAAGATCTAAGAAGGAGAGTACGACAAGCTGAACGGTATAATTGGGCAGCAACAAGGGGTGTAAATGAAGAGACGCTTCTGGAGAATTTACCCGAAGATCTCCAGACAGACATAAGACGTCATCTCTTCGAGTTTGTTAAGAAAGTTCGCATCTTTGCCCTGATGGATGAGCCTATCTTGGATGCAATTTGCGAGAGACTAAAGCAAAAGACATACATCAAAGGAAGTAAAATTTTGACTCAGGGTGGTCTTGTAGAGAAAATGGTCTTTGTTGTTAGAGGGAAATTGGAGAGCTTTGGAGATGATGGTACTAGTGTTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTTCTCACATGGTATCTTGAGCATTCTTCTGTGACCACAGATGGAAAAAAAGTAAGAGTTCAAGGACAGAGGTTGCTGAGTAATAGGACTGTAAGATGCTTAACAAATGTAGAGGCATTTTCACTTCGTGCCGGAGACCTTGAGGAACTCACAATTCTTTTCACTAGATTCTTGCGGAACCCTCATGTTCAAGGAACTCTAAGGTATTTATCACCTTATTGGAGATCCCTTGCAGCAAGTCGTATTCAGGTTGCATGGAGATACAGAAAGAAGCGTCTAAGTCGTGCCTATACCTGTCAATCAGATCAAACATTCTGA 6318 0.4035 MLSDTDAQPYDEPSDSKFRRMVTRTQSASISIPMSSLESYEKETSLVGHTGPLLSKRKTPYMHMSGPLYATTGTGNLLQKHVVSGNKADDRKTDNFATLHGSSSNYQNSDYDRKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKSSARWDPKFHNALYGDAKSFVRKLPSFFSSYVPGVMNPHAKVVQKWSKFLAIFCLIGIFVDPLFFFSLYVEKVNKCIVINWPLATTLALVRCVNDFVYFLNILLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMLLFVLPNSLWGANYAKNLLRAAILVQYFPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRNACHNSTIPGCMKFIDCGRGHPNFTSNPWINNTDAVACMDSSGFTYGIYQSAVPLTIETNVVNKYVYSLFWGFQQISTLAGNLIPSYFEWEVLFTMAIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPDDLRRRVRQAERYSWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRIFALMDEPILDAICERLRQKTHIKGSKILSHGCLVEKMVFVVRGKLESIGEDGTRIPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVSMASFENGELQKIPEETDAQPYHETLHSKFQRLLSGKQSASVSIPMESYEVETSLVGDSGSLYATSETDNVMQHSIVVTGNKTQESTDEFSTFDSTASKYWHKSYDSINEHLLRSGKLGICNDPYCTTCPSYFKSSQLRNPKACNISDPKFQNALNGDARLFARKFCSLCSSFVPGVMNPHSKFIQHWNKVLASFCLAAIFVDPLFFFLLYVRQDHNCIVINWKLTKALVIVRTMNDFIYFLHILLQFRLAFVSPESRVVGAGDLVDHPKEIAFHYLKGYFLIDLFVVFPLPQSPAGFIFESAWANFIINLLIFILSSHVVGSIWYLFALQRVNQCFRNACQSSNIPGCLAFIDCGHSQVGDNQLVLSSNQWNNNADAIACWNSSSSGSFSYGIYNNAVPLTTQTDIVTKYIYALFWGLQQISTLAGNQTPSDFVFETLFTIAIIGLGLLLFALLIGNIQNFLQGLGRRRLDLQLRRGDVEQWMSHRRLPEYLRRRVREAERYSWTATRGVNEATLMENFPEDLQVDIRRHLFKFVKEVRIFALMDEPVLDAICARLRQTTYIKGSRILSQGSVVEKMVFVVRGKLESIGEDGTRIPLSEGDVCGEELLTWYLEHSSVSADGRRVRLPGQKLLSNRTVRCLTNVEVLSLRAENLQEVTILFTRFLRSLRVQGALRYESPYWRSLAAIRIQGNMARFEKDEVPMLSETRAQLSDEFVDSNFRRLVSRTRSASISIPMASLESYEKETSLVGHTGPLRSVRKTPFVQMSGPLYATHGTSNISGQNIPATGNKVVESKTENFSTFSGTNENRWDNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKAAQPRTRKTSAIFDPKFHHVFYGDAKGFGRKFFSFCYSYVPGVMNPHAKVVQQWNKILAIFCLVAIFVDPLFFFLIYVKEFRLAYVSPESMVVGAGDLVDQPKKIALNYLKSYLFIDLFVVFPLPQVMILSVLPNYLGSSGANYAKNLLRAAILVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIVMLSGHVVGSFWYLFGLQRVNQCLRNACHDSNIRGCSTFIDCGRSSGRKSDIWSENVNASACLNASSGAFQYGVYVNAVALTTETRVVNKYVFALFWGFQQISTLAGNQTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEETLLENLPEDLQTDIRRHLFEFVKKVRIFALMDEPILDAICERLKQKTYIKGSKILTQGGLVEKMVFVVRGKLESFGDDGTSVPLSEGDACGEELLTWYLEHSSVTTDGKKVRVQGQRLLSNRTVRCLTNVEAFSLRAGDLEELTILFTRFLRNPHVQGTLRYLSPYWRSLAASRIQVAWRYRKKRLSRAYTCQSDQTF 2105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01725 2105 ProSiteProfiles cAMP/cGMP binding motif profile. 582 650 IPR000595 -
Vimu8g01725 2105 SUPERFAMILY cAMP-binding domain-like 510 650 IPR018490 -
Vimu8g01725 2105 CDD CAP_ED 1220 1336 IPR000595 -
Vimu8g01725 2105 MobiDBLite consensus disorder prediction 85 104 - -
Vimu8g01725 2105 Pfam Ion transport protein 1579 1862 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu8g01725 2105 Pfam Ion transport protein 979 1147 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu8g01725 2105 Pfam Ion transport protein 194 508 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu8g01725 2105 Gene3D - 197 507 - -
Vimu8g01725 2105 Gene3D Helix hairpin bin 510 574 - -
Vimu8g01725 2105 Gene3D Helix hairpin bin 1148 1212 - -
Vimu8g01725 2105 Gene3D Helix hairpin bin 1861 1926 - -
Vimu8g01725 2105 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 127 667 - -
Vimu8g01725 2105 Gene3D Jelly Rolls 1932 2056 IPR014710 -
Vimu8g01725 2105 Gene3D Jelly Rolls 1218 1342 IPR014710 -
Vimu8g01725 2105 Gene3D Jelly Rolls 580 695 IPR014710 -
Vimu8g01725 2105 SUPERFAMILY Voltage-gated potassium channels 859 1148 - -
Vimu8g01725 2105 SMART cnmp_10 1220 1352 IPR000595 -
Vimu8g01725 2105 SMART cnmp_10 582 698 IPR000595 -
Vimu8g01725 2105 SMART cnmp_10 1934 2052 IPR000595 -
Vimu8g01725 2105 CDD CAP_ED 1934 2050 IPR000595 -
Vimu8g01725 2105 ProSiteProfiles cAMP/cGMP binding motif profile. 1220 1288 IPR000595 -
Vimu8g01725 2105 SUPERFAMILY cAMP-binding domain-like 1862 2054 IPR018490 -
Vimu8g01725 2105 SUPERFAMILY Voltage-gated potassium channels 1571 1862 - -
Vimu8g01725 2105 SUPERFAMILY cAMP-binding domain-like 1152 1343 IPR018490 -
Vimu8g01725 2105 Gene3D - 1554 1859 - -
Vimu8g01725 2105 SUPERFAMILY Voltage-gated potassium channels 189 510 - -
Vimu8g01725 2105 ProSiteProfiles cAMP/cGMP binding motif profile. 1934 2002 IPR000595 -
Vimu8g01725 2105 CDD CAP_ED 582 650 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01725 Vimu-Chr8 23058820 23094082 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01725 4 660 Ion Channels AT3G17700 61.261 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01725 K05391 - gsj:114390051 2347.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01725 8 23058820 23094082 Vimu8g01725 8 23058820 23094082 ECH