Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01719 ATGGTCATCACATCCGCTGCCACACACCCAGATGAACAAGATGAGTGTCTATCATCAACGTTTGCTTCCAGATATGTGCGGCAACCTATTCCCAAGTTCAAGATGCCAGATCATTCTATACCAAAGGATGCTGCTTATCAGTTGATAAACGATGAGTTGATGTTGGATGGCTTACCAAGGCTCAACTTGGCCTCATTTGTGACCACTTGGATGGAGCCTGAGTGTGAAAAGCTCATATTGGCCTCACTTAACAAGAACTATGTCGACATGGATGAGTACCCTGTCACCACTGAGCTTCAGAATCGATGTGTCAATATAATAGCAAATCTATTTCATGCTCCTCTAAGTGAACAAGAGACTGCAGTAGGTGTTGGAACTGTGGGATCATCTGAGGCAATAATGTTAGCAGGTTTGGCTTTCAAAAGGAAATGGCAGACAAAGAGAAAAGCAGAAGGCAAACCATATGATAAGCCCAACATAGTTACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTTGAGCTCAAGGAAGTGAAACTCACTGAGGGATACTATGTGATGGACCCAGTGAAAGCAGTTGAAATGGTGGATGAGAACACCATCTGTGTTGCTGCCATTTTGGGGTCAACTATGACTGGAGAATTTGAGGATGTGAAACTTCTCAATGAACTTCTCACTGAAAAGAACAAGGAGACAGGTTGGGATACCCCAATTCATGTAGATGCTGCCAGTGGGGGGTTTATTGCTCCATTTCTCTACCCTGATCTAGAGTGGGATTTTCGTTTGCCATTGGTGAAAAGCATCAATGTTAGTGGTCACAAGTATGGTCTTGTCTACCCTGGTGTTGGTTGGGTTGTCTGGAAGAGTAAGGATGACTTGCCAGATGAACTTGTTTTTCACATCAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGTAAGCCATCTTGTGCAAAACCTATTTTGTCTTATGCTTTTGCTATTGTTGTTGACAAAAAGGGTTACAAAAACATCATGGAAAATTGCTGGGACAATGCAAGAACTCTGAGGAAAGGAATTGAGAGAACAGGAAGGTTCAACATCATCTCGAAGGACATAGGGGTGCCACTTGTGGCCTTCTCCTTGAAAGACAGTAGCCAGCACTCAGTGTTTGAGATATCAGACCAGCTGAGAAAATATGGGTGGATAGTTCCAGCCTACACAATGCCACCAGATGCAGAGCACCTTGCAGTCCTGAGGGTGGTGGTGAGGGAGGATTTCAACCATGGTTTGGCTGAGAGACTTGCTGCAGACATAGACAAGGTTGTGAAGCTCTTAGACACACTTCCTAGCCCCATCACAACCAATGCTGCTCATGTCACACCCATCACCCCTGAGCCTAATCAGAAGATCAATAAGAGTGATATAGAGACTCAGAGAGAGATTTCTAGCTACTGGAAGAGACTTCTGGAGGGGAAGAAACTTGGAGCATGCTAG 1509 0.442 MVITSAATHPDEQDECLSSTFASRYVRQPIPKFKMPDHSIPKDAAYQLINDELMLDGLPRLNLASFVTTWMEPECEKLILASLNKNYVDMDEYPVTTELQNRCVNIIANLFHAPLSEQETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPVKAVEMVDENTICVAAILGSTMTGEFEDVKLLNELLTEKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWKSKDDLPDELVFHINYLGSDQPTFTLNFSKGKPSCAKPILSYAFAIVVDKKGYKNIMENCWDNARTLRKGIERTGRFNIISKDIGVPLVAFSLKDSSQHSVFEISDQLRKYGWIVPAYTMPPDAEHLAVLRVVVREDFNHGLAERLAADIDKVVKLLDTLPSPITTNAAHVTPITPEPNQKINKSDIETQREISSYWKRLLEGKKLGAC 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01719 502 FunFam Glutamate decarboxylase 367 454 - -
Vimu8g01719 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vimu8g01719 502 FunFam Glutamate decarboxylase 69 366 - -
Vimu8g01719 502 Gene3D - 1 68 - -
Vimu8g01719 502 FunFam Glutamate decarboxylase 6 68 - -
Vimu8g01719 502 SUPERFAMILY PLP-dependent transferases 10 449 IPR015424 -
Vimu8g01719 502 Gene3D - 69 366 IPR015421 GO:0003824
Vimu8g01719 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 387 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vimu8g01719 502 Gene3D - 367 454 - -
Vimu8g01719 502 NCBIfam glutamate decarboxylase 19 450 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01719 Vimu-Chr8 23009267 23011640 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01719 7 502 Calmodulin-binding Proteins AT3G17760 75.100 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01719 K01580 - gmx:100783047 886.33