Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01717 ATGAATGCTTCAATGAGGAAAAAGGTTCAAAGGAAGTGTAAGATAATAGGATACAATCTCAAAGTCGATGCTCTCGATGAGATCCTCTCCTTCGCATCTCGCTTCGAAGGCGACGAGGATGAAGCAATCGATGTCCTCCTCAAAGAGCTCGAAAAATCTCTGAAATCCACCATAATCGACAAGGAGACAGTGCACCGTGTGGTGAGCCAACTGCTGGAAGTTGAGGCGGACATGGAGGATGGCTCCGATGCTGGCACCAGCACCTCTTCCGCTATTCGCGTTGTCGATGCGTTTCTCATCCCGAAGTATAAATACGACACTGTCAGAAAGCAGTTCTACGAGCATACGGGCACCTTGTCTATTCACGGAGAAGCATCTGCAAAAGCAGCTTTGTACAGGGACAGGTTTCTATTGTTGTCCCAGAGGCTCTCTCGCGACCAGCATTTTTCCAAACCTGCTTTTGAATCTGAATTTTCTCATTTCGGGAGTTGTGAGATATCTCCTATTCAATCTCTGGTTGGGCAAACAGGTAGAAAATGGGTGATGGGCGTAATATCTCAGCTGGAAGATGGTCATTACTATTTGGAAGACCTTACAGCTGCAGTTAAAATTAACTTGTCCAATGCAATATCCTTTAGCCGTGAATCTATAATCATCTGTTTCTTTGACTGGCAATACAAGATAACTACAGGACTTTTTTCAGAGAACACTATAGTTGTGGTTGAAGGGGAGATGCTCGTGGAGGGTATTTTTCAGGTCTTAACATGTGGATTTCCTCCACTGGAGGATAGAGATAAGTCTCTGAAAGTACTTGCAGGGAATGACTTTTTTGGTGGTGGTACTCTTACAAAAGAGGAAACTATTAGACTGGAAGAGATGGAGAAAAGAGCAGTAAATGACATGTTTGTCATACTTTCTGATGTTTGGCTAGACAGTGAAGAGAAGGCTTTGACAAAGCTAGAGACTGTTCTGGATGGTTTTGAGAGTGTGGAAGTGGTTCCTTCCTTATTTGTTTTCATGGGAAACTTCTGTTCTAGGCCATGTAACCTTTCATTTCATTCTTATTCGAGCCTCAGACTGCAGTTTGGTAAGCTGGGGGAAATGATTGCTGCCCATACACGGCTGAAAGAGCACAGTCAATTCCTGTTTATCCCAGGTCCCGATGATGCAGGTCCTTCTACTGTTCTTCCTAGATGTGCTCTACCAAAATATTTAACCGAAGAACTCCAAAAGCACATACCCAATGCCATATTTTCAAGCAACCCTTGCAGAGTCAAATTTTACACCCAAGAAATTGTATTTTTCCGCCAGGATATGCTGCATAGAATGCGTCGCTCATGTTTGATGTCTCCTTCTACGGAAGAAACTGATGATCATTTTCAACATGTAGTTTTTCCCTCGGGTCTTGTTGCTACCATAACCCATCAAAGTCATCTCTGTCCACTGCCCCTTACTGTTCAACCTATAATTTGGAATTATGACCATTGTCTTTATCTTTATCCAACTCCTCACACGATAGTTTTGGGTGACAGAAGTCAGCAGAAAGCATTCAAGTACACAGGAATCACTTGTTTTAATACTGGTTCCTTCTCAATTGACAGCACGTTTGTGGCATATCGTCCCTGCTCTCAGGAAGTTGAATTGTCAGCCTTATGCTCCACACAAGCACAGCTGCATATAGTGAAAGGAGATGCTGCCATAGCCACAAAAGCTGAAAGCAAGCACTTTACACCTCCACCAATGTGA 1746 0.4336 MNASMRKKVQRKCKIIGYNLKVDALDEILSFASRFEGDEDEAIDVLLKELEKSLKSTIIDKETVHRVVSQLLEVEADMEDGSDAGTSTSSAIRVVDAFLIPKYKYDTVRKQFYEHTGTLSIHGEASAKAALYRDRFLLLSQRLSRDQHFSKPAFESEFSHFGSCEISPIQSLVGQTGRKWVMGVISQLEDGHYYLEDLTAAVKINLSNAISFSRESIIICFFDWQYKITTGLFSENTIVVVEGEMLVEGIFQVLTCGFPPLEDRDKSLKVLAGNDFFGGGTLTKEETIRLEEMEKRAVNDMFVILSDVWLDSEEKALTKLETVLDGFESVEVVPSLFVFMGNFCSRPCNLSFHSYSSLRLQFGKLGEMIAAHTRLKEHSQFLFIPGPDDAGPSTVLPRCALPKYLTEELQKHIPNAIFSSNPCRVKFYTQEIVFFRQDMLHRMRRSCLMSPSTEETDDHFQHVVFPSGLVATITHQSHLCPLPLTVQPIIWNYDHCLYLYPTPHTIVLGDRSQQKAFKYTGITCFNTGSFSIDSTFVAYRPCSQEVELSALCSTQAQLHIVKGDAAIATKAESKHFTPPPM 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01717 581 Gene3D - 2 70 - -
Vimu8g01717 581 Pfam DNA polymerase alpha/epsilon subunit B 302 514 IPR007185 GO:0003677|GO:0006260
Vimu8g01717 581 PIRSF DNA_pol_epsilon_2 1 553 IPR016266 GO:0003677|GO:0006261|GO:0008622
Vimu8g01717 581 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 1 551 IPR016266 GO:0003677|GO:0006261|GO:0008622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01717 Vimu-Chr8 22998109 23003800 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01717 17 508 Core DNA Replication Machinery Family AT5G22110 67.140 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01717 K02325 - gmx:100784116 904.434