Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01715 ATGTGCAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAGCTTCGAGAATTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTTCGAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAATTGGACCCGAGAATAAACAGAAGTCCTTTTACGGAGGAAGAAGAAGAGAGGCTTCTTGCTTCTCACAGGATTCATGGGAACAGATGGGCTGTGATAGCAAGACACTTCCCAGGAAGAACTGATAACGCAGTCAAAAACCATTGGCATGTGATGATGGCAAGGATTCGGAGAGAAAGGTCCAAAGTTTATAACACCAAACAGCCACTTTTTCCTCCAAACCTTGACAGCAATTTTGAGACTAATTCTATCCCTTCTTTTGTTGACAAGTATTATGAAAAGTTCAGCAACCCTTGTGTCTCACACACCCCTTTTCACTTTCCAAACAGCTTTCACTTTCAACATCCAACTTCTGCTTCCACACTGCCTCCAGAGAAGAGTCACTCAGTAGAGTTCTATGATTTTCTTCAAGTAAACACCGATTCGAACAAAAGTGAAGTGACAGACATAGCCAGAAGAGACGAAGAGGAAGTGAGTCAAGATGGTGTGGAACTGAAGAACATTGGTGTTCCATTCATTGATTTTTTGTCTTCTGGAACCTACTAA 690 0.4348 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYNTKQPLFPPNLDSNFETNSIPSFVDKYYEKFSNPCVSHTPFHFPNSFHFQHPTSASTLPPEKSHSVEFYDFLQVNTDSNKSEVTDIARRDEEEVSQDGVELKNIGVPFIDFLSSGTY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01715 229 FunFam MYB transcription factor 4 55 - -
Vimu8g01715 229 PANTHER MYB PROTEIN-RELATED 4 164 - -
Vimu8g01715 229 Pfam Myb-like DNA-binding domain 7 67 - -
Vimu8g01715 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Vimu8g01715 229 Gene3D - 57 117 - -
Vimu8g01715 229 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Vimu8g01715 229 SMART sant 55 103 IPR001005 -
Vimu8g01715 229 SMART sant 3 52 IPR001005 -
Vimu8g01715 229 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Vimu8g01715 229 Gene3D - 4 55 - -
Vimu8g01715 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Vimu8g01715 229 CDD SANT 58 101 IPR001005 -
Vimu8g01715 229 CDD SANT 7 48 IPR001005 -
Vimu8g01715 229 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01715 Vimu-Chr8 22980467 22982326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01715 1 227 MYB Transcription Factor Family AT1G17950 57.787 9.64e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu8g01715 Myb_DNA-bind_6 8.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01715 K09422 - gmx:100811746 393.275