Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01713 ATGGCAGACACAAATTCAGTTGAAGTGATTTTGGATTTTCTGAGGAGGAATAGGTTCACCCGAGCTGAGGCGGCTTTGCGAAGTGAGCTCAGTAACTGTTCTGATGTGAATGGTTTCTTGCAAAAGCTTACATTGGAAGAAAAGGACTTGCGTGGCGGGTTGCACAATGATAAGGGGAAGCCTGTTATAGAAAATCATGGGTTGGATTCTCGTGACGGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATAGAATGTGGGACTGGTAGAAATGCTGCAGAAGAAAGCAAGTGGAAAACTGTTGCTCCCACAGGGGAAAGGAATAAGTCTGGTGAAGTGGTTGGAACGAGTGAAAAAAACTTTACCTTCTCCAAGAGTTCGGAGGATAGTGTTCTTGATTTGTACTCATGGAAGTTTAATCCCAGCAATGGTCTTGTTGAACCTTACCAAAACGATAGTGGAAGTAGGCCTAGTAATGCTTTGAAGGCCCCGGTATCTCAGCAATCAAAGTATCAAACTGGTGAAGTTCCTGCTGCAACCAACAGTAATGTGAAATCTGGGGAGGGGGAGGTAAATAATGTACCTGCAGAAAAAACAACCTTGTGGCTTGGAAGTAGTGGTAAAGCCTCTACGGAACCAAAGTATGACCTTATGCATAACAAAGAACCCAAGGAACTTGATCTGCAGCTCAAATTTAATGCTTCATCTCTTAAAGAGAGCTTGACAGATAATCACTTGTCAAGAACTGATGAGAATATGAACTCATCTACAGATCTATGGAAAGATTGTTCCGTGAAGACTGTTTTCCCTTTCTCAAAAGGGGATATGTCTACAAGCTACAACGGTTCAACTTATTCTGACAGACAAGAAGAGAAGAGAAGGGCAGAAAACGGTGATGTTATGACATCAATAAAAGAGCAAGTGGATGAAGTAGGAAGAGCTCTTTACTTAGGAAAGTTGCAAGGCAGTTCTGGCAGCTTAAATTTTCCTCTTGAACTGGAGAATCCAAAAGAAGAGTTTCCTAGGCTTCCTCCTGTAAAAATCAAGTCAGAAGATAAGCCCTTGACTTTTAACTGGGGAGATAAGTTTGAGTCTGACGGACTGGCGTTGAAACTCACCGGTGCCGACAACTCCTTTCTTATAGGGTCATATTTGGATGTCCCTATTGGACAGGACATTAAAACTACTGGTGTGAGGAAGTCTACAGGGGGCAGCTGGCTGTCTGTAAGTCAAGGGATTTCTGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAATTGGGGATGGGTTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGATGAATATGATGATGATGAAGATGTTGGGTACATGAGACAACCCATTGAAGATGAGGCCTGGTTTTTGGCGCATGAAATTGATTACCCCAGTGATAATGAAAAGGGGACGGGGCATGGAAGTGTTCCAGATCCTCAGGAAAGAGGTCCATCCAAAGATGAAGAGGATGATCAATCTTTTGCTGAGGAGGATTCTTATTTCTCTGGTGAGCAATATATTCTACCAAAAAATGTCGAGCCGGTCACTTCAGATGATCCTATTGGTCTAACTATTACTGAAATGTATGGAAGAACCAATGGTAACGATGTAATGACTCAATATGATACACAACTGGTGGACGTTGAAGAACTGAATCTGATGCATATAGAACCTGTCAGGCAGGGCTTTGTCACTCACCAAAATGATCTCATCATGCTGGGAGATGGGAGGGTTCTGAATCATGGTGTGAGGCCACGGATTGAGGACATGGAAGATGATCAGCATGGTTCAGTTCGATCAATTGGAGTGGGGATCAACAGTGATGCTGCTGATATTGGTAGTGAAGTGCATGGAAGTTTGATTGGTGGTAGTAGTGAGGGGGATTTAGAATATTTTCGTGATCATGATACTATGCACAGTGGCACCAAACACACTCATCAGGATTTGGACAAGAGTTCTGGTAACAAATCAGTTAAAAATAACAAGAAAACTGACAAGAATGAATCAAATAAATATGTCATAGACAGTGATAAAGATGCGTGCTCACAGATAAAAACACATGCTGATGGGAACTTTTCATTTCCCCAATCTCTTAGAGATGGCCAGATGATTCAGGCTGGCTCCAGTAAGTCCCTATGGACGAGTAATGGTAACGCAGATGAAACCGATGACTGTCTTAATGCCTTTGCAGGCTCTGATGACATGCTTTCATCTTGGAGGCGGAAGAGTAGTGATTCTTCGCCTGTTAAAAGTTCTAGGGATGATAATAATGCTATCGTGGTAAGATCCAGAAACTCTTCTCCAACTACAGTCTCAAATTATGGGTATACTGATGGAGAGCATGTCAAGCTAGAAAAGGATGAAAAGGTAAGTGTTGTAAGGGAAGACGATATAGGTGCCTCACTAGAGGATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAAGGCAAATAAAGGCTCAAGAGGAAGAATTTGAAACCTTCAATCTAAAGATCGTGCACAGGAAAAACAGGCATGTGTTAAATATATCATTCTTACTATTTTTGTTAACTCAAAATGGTAAGATTCTTTCCCCCTTCCCATGGAAAGTTATAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCCGTAATAGCTGGGCGCTATCATGTTACTGAGTATCTTGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTGCACACAGGCATGGATGTTTGTGTTAAGATTATAAAAAACAACAAAGACTTCTTTGACCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTTCCACCTTCTAAGATTGTATGATTATTTCTATTATAGAGAACATTTGTTAATAGTATGTGAGTTGCTCAAAGCCAACCTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTTTATTTCACGATGCCAAGGTTGCAGTCAATCACCATTCAGTGTTTGGAGGCACTTCAGTTTTTGCATAGTCTTGGACTAATACATTGTGACTTGAAGCCAGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAAGTGAAGGTTATTGATCTCGGAAGTAGTTGTTTTGAGACAGATCATCTTTGTTCGTATGTTCAGTCCAGGTCTTATCGTGCTCCTGAGGTTATTCTGGGGCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAACGTCCTCTTCCAAAATGATTCCCCTGCTACATTACTTGCTCGGGTGATCGGGATCATTGGCCCAGTTGATCAAAGTTTACTTGCCAAAGGACGGGATACATATAAATACTTCACAAAAAATCACATGCTTTATGAACGGAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCAAAAAAGACATCATTGAGGCATAGATTACCGATGGGAGACCAAGGCTTCATCGACTTTGTTGCTCATCTGCTCGAGGTTAACCCAAAGAAGCGACCTTCTGCGTCCGAGGCCCTGAAGCACCCATGGTTATCATACCCTTATGAACCAATATCATCTTAA 3624 0.4145 MADTNSVEVILDFLRRNRFTRAEAALRSELSNCSDVNGFLQKLTLEEKDLRGGLHNDKGKPVIENHGLDSRDGVEVSKELIVKEIECGTGRNAAEESKWKTVAPTGERNKSGEVVGTSEKNFTFSKSSEDSVLDLYSWKFNPSNGLVEPYQNDSGSRPSNALKAPVSQQSKYQTGEVPAATNSNVKSGEGEVNNVPAEKTTLWLGSSGKASTEPKYDLMHNKEPKELDLQLKFNASSLKESLTDNHLSRTDENMNSSTDLWKDCSVKTVFPFSKGDMSTSYNGSTYSDRQEEKRRAENGDVMTSIKEQVDEVGRALYLGKLQGSSGSLNFPLELENPKEEFPRLPPVKIKSEDKPLTFNWGDKFESDGLALKLTGADNSFLIGSYLDVPIGQDIKTTGVRKSTGGSWLSVSQGISEDTSDLVSGFATIGDGLSESVDYPNEYWDSDEYDDDEDVGYMRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPSKDEEDDQSFAEEDSYFSGEQYILPKNVEPVTSDDPIGLTITEMYGRTNGNDVMTQYDTQLVDVEELNLMHIEPVRQGFVTHQNDLIMLGDGRVLNHGVRPRIEDMEDDQHGSVRSIGVGINSDAADIGSEVHGSLIGGSSEGDLEYFRDHDTMHSGTKHTHQDLDKSSGNKSVKNNKKTDKNESNKYVIDSDKDACSQIKTHADGNFSFPQSLRDGQMIQAGSSKSLWTSNGNADETDDCLNAFAGSDDMLSSWRRKSSDSSPVKSSRDDNNAIVVRSRNSSPTTVSNYGYTDGEHVKLEKDEKVSVVREDDIGASLEDEEAAAVQEQVRQIKAQEEEFETFNLKIVHRKNRHVLNISFLLFLLTQNGKILSPFPWKVITGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPSDKFHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPVDQSLLAKGRDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01713 1207 MobiDBLite consensus disorder prediction 149 190 - -
Vimu8g01713 1207 Pfam Protein kinase domain 896 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01713 1207 CDD PKc_DYRK_like 896 1198 - -
Vimu8g01713 1207 MobiDBLite consensus disorder prediction 752 768 - -
Vimu8g01713 1207 Coils Coil 821 841 - -
Vimu8g01713 1207 MobiDBLite consensus disorder prediction 474 507 - -
Vimu8g01713 1207 MobiDBLite consensus disorder prediction 647 682 - -
Vimu8g01713 1207 MobiDBLite consensus disorder prediction 749 768 - -
Vimu8g01713 1207 SUPERFAMILY Protein kinase-like (PK-like) 885 1200 IPR011009 -
Vimu8g01713 1207 Gene3D Phosphorylase Kinase; domain 1 890 977 - -
Vimu8g01713 1207 SMART serkin_6 896 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01713 1207 FunFam Putative serine/threonine-protein kinase dyrk2 890 977 - -
Vimu8g01713 1207 Gene3D Transferase(Phosphotransferase) domain 1 950 1198 - -
Vimu8g01713 1207 ProSiteProfiles Protein kinase domain profile. 896 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01713 1207 MobiDBLite consensus disorder prediction 149 192 - -
Vimu8g01713 1207 PANTHER DUAL SPECIFICITY PROTEIN KINASE 415 1198 - -
Vimu8g01713 1207 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1022 1034 IPR008271 GO:0004672|GO:0006468
Vimu8g01713 1207 FunFam Serine/threonine-protein kinase ppk15 975 1199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01713 Vimu-Chr8 22957467 22963851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01713 895 1193 MAP Kinase Gene Family AT5G19010 31.034 2.30e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vimu8g01713 Pkinase 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01713 - - gmx:100786225 2112.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04966 11 68980777 68982162 Vimu8g01713 8 22957467 22963851 PCT