Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01697 ATGGTTGGTTGGATATGTGCAGATCCAGATGCAGAGGTGGTGTCCCTCTCGCCGAAGACTTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCGTGGAAGCTATTGAAGAGGGAGACACCCGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCAACTTGTTTGCACCATGACCCTTGTCATGCCTTGGGTGATCTTGTTGGGATTAAGAAGCATTTCAGGAGAAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGCGGTACCCGGGGCCACTCCTGTGATTGTGGCCGCGTTTTCTCGAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCCTCTGCGTGCCTTTCTAGAACAGCCTCAAGCCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGGATCATAATACCAAAGCCAACTGAACCACCCACAATTTTCATGAATAACCCTACTGCTCATGCTATCACCACTGCTGAAACCTCATCCAAGAACAACAAACTCCACCCCAACTTGGATCTCCAACTCTCAACTCCCACCACCACCAACAACAAAAACATCATCAACAACAGTTCAAACGTTGCAAACCCCATTGATGCTGCAATATCAACATCATTATCACCTAAGAGGGATCATCGTGAGAACCACTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATGTGAGTGAGAAAAATGAATCAAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACAATGGGAAGCAGTCCAACATGGCCTTATTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAGGCACAAGCCGAACTCGACAAGGCCTACGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACCTGCCTCGCTTGCAAACAACAATTCCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAAGTTGAAAATGATAACGGAAAAGACCATGGCAAAGACAACTAA 1317 0.4784 MVGWICADPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRIIIPKPTEPPTIFMNNPTAHAITTAETSSKNNKLHPNLDLQLSTPTTTNNKNIINNSSNVANPIDAAISTSLSPKRDHRENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNGKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCLACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKDHGKDN 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01697 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 49 IPR013087 -
Vimu8g01697 438 Pfam Zinc finger, C2H2 type 27 49 IPR013087 -
Vimu8g01697 438 MobiDBLite consensus disorder prediction 278 312 - -
Vimu8g01697 438 SMART c2h2final6 27 49 IPR013087 -
Vimu8g01697 438 SMART c2h2final6 104 131 IPR013087 -
Vimu8g01697 438 SMART c2h2final6 68 98 IPR013087 -
Vimu8g01697 438 MobiDBLite consensus disorder prediction 163 193 - -
Vimu8g01697 438 MobiDBLite consensus disorder prediction 219 251 - -
Vimu8g01697 438 FunFam protein indeterminate-domain 12-like 6 74 - -
Vimu8g01697 438 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Vimu8g01697 438 Gene3D Classic Zinc Finger 26 50 - -
Vimu8g01697 438 Gene3D Classic Zinc Finger 89 165 - -
Vimu8g01697 438 MobiDBLite consensus disorder prediction 267 312 - -
Vimu8g01697 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 378 IPR031140 -
Vimu8g01697 438 SUPERFAMILY beta-beta-alpha zinc fingers 24 50 IPR036236 -
Vimu8g01697 438 MobiDBLite consensus disorder prediction 164 190 - -
Vimu8g01697 438 Coils Coil 326 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01697 Vimu-Chr8 22796615 22798939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01697 8 428 C2H2 Transcription Factor Family AT2G01940 56.250 9.99e-141 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu8g01697 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01697 K25871 - gmx:100800187 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04963 11 68962873 68964985 Vimu8g01697 8 22796615 22798939 PCT