Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01696 ATGGATGGTGATAATGGTCTCAACATCCGTAACTGGGGTTACTATGAACCGGCCACATCGTCGTTTAAGAGCCACCTGGGGCTGCAGCTGATGTCATCCATGCCGGAAAAGCCTTTAATCGGAGGGCGGAATGCTGCGGTTTTATCTGCCACAAATGGGGCATTTCACCACAGAGACATTGGTGTGTCCCACGCTACATACCCTATGGAATACACGAGAGATGCTTGGATTAGTAGTTACAGGGACAAGTATATGAATATGATACCTACAAATCATAACTATGGTGGTATTCCAGAGACATCTTCGGCACATCAAATTCAAATGATTCCACCGCCGGAATTGCCGAAGGAAGAAAGGGCAGTGGAAGAGGAACCTGTTGTTGAGAAGGCAACTGGGGGCAGTCGCAAGAAAAGACAGAGCCCTAAGGTGCCGAAATCTCCCAAGGCAAAGAAGTCCAAGAGGGGCCCTCGTGTGCCAAAGAATGAGAATGCTCCCACAGTTCATCGTGCTAGGGTTCCAAAGAAAACTACTGAAATTGTAATAAATGGTATTGACATGGATATTTCTAGAATTCCAATCCCTGTTTGTTCATGCACAGGAGCAGCTCAACAGTGTTACAGATGGGGCTCTGGAGGGTGGCAATCTGCATGTTGCACAACAGGCATGTCAGTTTATCCTTTGCCTATGAGTACCAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCATTTAAGAAAGTTTTGGAGAAACTTGCAGCTGAGGGTTATAACTTTTCTAATCCTATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGGTAG 855 0.4585 MDGDNGLNIRNWGYYEPATSSFKSHLGLQLMSSMPEKPLIGGRNAAVLSATNGAFHHRDIGVSHATYPMEYTRDAWISSYRDKYMNMIPTNHNYGGIPETSSAHQIQMIPPPELPKEERAVEEEPVVEKATGGSRKKRQSPKVPKSPKAKKSKRGPRVPKNENAPTVHRARVPKKTTEIVINGIDMDISRIPIPVCSCTGAAQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01696 284 PANTHER - 1 284 IPR010409 -
Vimu8g01696 284 MobiDBLite consensus disorder prediction 136 155 - -
Vimu8g01696 284 MobiDBLite consensus disorder prediction 115 135 - -
Vimu8g01696 284 MobiDBLite consensus disorder prediction 114 174 - -
Vimu8g01696 284 SMART GAGA_bind_2 1 284 IPR010409 -
Vimu8g01696 284 Pfam GAGA binding protein-like family 1 284 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01696 Vimu-Chr8 22778800 22782489 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01696 1 284 BBR or BPC Transcription factor family AT2G01930 51.342 1.03e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vimu8g01696 GAGA_bind 5.1e-110 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01696 - - gmx:100784091 500.745