Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01692 ATGGAAAACTCTTCATCATCTTCATCTTCAAACTCTGTGTATCGAGAGTGTCTCCGCAACCATGCAGCGAGTCTCGGTAGTTACGCTACTGATGGTTGCGGAGAGTTCACTCTCGATATCGACGTCTCCTCTTCCTCCCTCCAGTGTGCAGCTTGCGGTTGTCACCGCAACTTCCATCGCAAAGTGACGTGTCCCAGTGCGATGGAAGGTCTGCAGGGTGGAGGGAGCGGGGATATGATGGAATACTCCGGAGGAGACGTTGGAAGAATGGAGGTGGGAGAGAGGAGCAGCAGGAAGAGGTTCAGGACTAAGTTCAGTGCGGAGCAGAAGGAGAAGATGCTGGCGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAGAGAGGTGGATGATGAGATTGAAAGGTTTTGTAAAAGTGTTGGAGTTACAAGACAGGTTTTCAAGGTGTGGATGCATAATCATAAGAACAACTCTAACTCATCTAATTCTTCTGCTAATCTTTCTTCCCTCACTCAGTGA 519 0.4952 MENSSSSSSSNSVYRECLRNHAASLGSYATDGCGEFTLDIDVSSSSLQCAACGCHRNFHRKVTCPSAMEGLQGGGSGDMMEYSGGDVGRMEVGERSSRKRFRTKFSAEQKEKMLAFAEKLGWKLQRREVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANLSSLTQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01692 172 Pfam ZF-HD protein dimerisation region 13 63 IPR006456 -
Vimu8g01692 172 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 62 IPR006456 -
Vimu8g01692 172 NCBIfam homeobox domain, ZF-HD class 98 156 IPR006455 -
Vimu8g01692 172 FunFam Zinc-finger homeodomain protein 2 87 160 - -
Vimu8g01692 172 Gene3D - 83 162 - -
Vimu8g01692 172 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 14 61 IPR006456 -
Vimu8g01692 172 SUPERFAMILY Homeodomain-like 91 157 IPR009057 -
Vimu8g01692 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01692 Vimu-Chr8 22754989 22756221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01692 14 156 ZF-HD Transcription Factor Family AT4G24660 44.311 8.51e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu8g01692 ZF-HD_dimer 5.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01692 - - vun:114182488 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04962 11 68950126 68950599 Vimu8g01692 8 22754989 22756221 PCT