Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01684 ATGCCCCAGAATAGCATTTTCCGAGACCAATCATCGAATCAGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCAATTTGCACTGGAGGGGATTCACCCTTTGATACATGGCCACAACAACCAGATGAAGATGATTATGCTCAAGGCTTCAAATCCCACAGTGATGGTTCAATCAAAGGTTGTAGCCCTTACCACACAGACACACAACTTTCTTTAGCAAACTCTACAACTTCTGTCACTGCTATAACTCCCTCTGAGGCTGACAGCACTTGGAGGAAGAGAAACTTTGTTAGACTCAGCCATCATCATGGAGCTTCTGAGGGTCAAATAAGACTCATCAATGGAATCCCTCTCTACAGTAACCTTTCTTCTTTGGACAACACCAGTACTCCTCCCTCAATAGAGAGAACCCCCACCAACAAGTTTTCCTTTCCTTCTCTATATTCACTTCCACACCCTCCTTATTCTGCCAATTCTGCTCCTAACTATAGCTATAATGGTGCTGTTGGGGGTGTAGCAGCAGAACCAATCTCAAGGTTTCATGATATAACCATGGAGAATACTCCAAGGCCCCAACAGTTTCAGTACTTTGATTACCCTCAGCAGCAGCAGCAGCAGTTTGGGAATAGTACAAATTTTGGAGCTTCTGAATTTTCTAATGGATTTGTGAGGTCAAGAATGTTGCCAAGGCAACAAAGTAGTAAGAGGAACATGAGGGCTCCGAGAATGCGTTGGACTAGTTCTCTTCACAACCGCTTTGTTCATGCTGTTGAACTACTTGGTGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAACTAATGGATGTGAAAGATCTAACACTAGCTCATGTGAAGAGTCATTTGCAGATGTATCGGACTGTTAAGAACACTGACAAACCTGCACCTTCTTCAGATGGGGATGAGGATTTCATGTCCATAACAGTCCCAAATAATCAAAATAAGAATTTTTTACCCAATCAGAGAGGAGCTCCAAATGCATCCCTGGATCATGATATGGGCCACACTTCCAGAAATCTATGGGCTAATTCTTCTACCAGGTAA 1083 0.434 MPQNSIFRDQSSNQIPDLSLHISLPNSAPSSICTGGDSPFDTWPQQPDEDDYAQGFKSHSDGSIKGCSPYHTDTQLSLANSTTSVTAITPSEADSTWRKRNFVRLSHHHGASEGQIRLINGIPLYSNLSSLDNTSTPPSIERTPTNKFSFPSLYSLPHPPYSANSAPNYSYNGAVGGVAAEPISRFHDITMENTPRPQQFQYFDYPQQQQQQFGNSTNFGASEFSNGFVRSRMLPRQQSSKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAPSSDGDEDFMSITVPNNQNKNFLPNQRGAPNASLDHDMGHTSRNLWANSSTR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01684 360 MobiDBLite consensus disorder prediction 317 336 - -
Vimu8g01684 360 SUPERFAMILY Homeodomain-like 244 301 IPR009057 -
Vimu8g01684 360 Gene3D - 246 303 - -
Vimu8g01684 360 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 359 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vimu8g01684 360 FunFam Myb family transcription factor 245 303 - -
Vimu8g01684 360 MobiDBLite consensus disorder prediction 35 60 - -
Vimu8g01684 360 Pfam Myb-like DNA-binding domain 248 299 IPR001005 -
Vimu8g01684 360 MobiDBLite consensus disorder prediction 302 360 - -
Vimu8g01684 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 247 300 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01684 Vimu-Chr8 22684809 22686955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01684 227 320 G2-like Transcription Factor Family AT5G16560 81.053 7.65e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu8g01684 Myb_DNA-binding 9.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01684 - - pvu:PHAVU_004G1468001 498.434