Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01682 ATGAAGACTTTCTCCTCAATTCAACTACCCCACCATTTTTATTGTGCAAGATTCTTCTCCCACACAACCACAAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCATTTGCCAGGCAAAATCAGGCATAGATGGGTCATTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGGCCTTGTTCTTGAAGAAGCAAGGTTTGAGCAATGCGGTTGCTGCTAGAACCATCAACAAGTCAGATCTTTTTATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAGATCTTGGTATCTTGCAGGAAGAGAGCTTACAACTTTGGAGATCAGGGATGCTCTTATCCCTTATCTTGAATCTCTGTTTGAAGAGCATGGTGACATTCTAGTGGATGTCGTGGAAAACTATCCAAATCCACCTGTTAAGGACAAATCTGCAGTGCCAGTTCCTCCTTCTAGTCCACTGTTAGACTCTAAGAAGCTTAAAGCTGTGTCACTAGTGAGTGAGACAGACCCAGATGGTGGCAATCTGCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTCGGAGTATCACACATCGATTCCCAGCTTTTGCCTACTATAGCTTGGAGGGTAAAGTTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGGGTTCCAAGAGAGCACATTCCCATTATCCTCAGTAAAAGGCCTCAGTTATGTGGTTTCAGTCTATCTGAAAATCTTAAACCCACCATGAAGTTCTTAGAGTCATTGGGTATTGACAAGAAGCAATGGCCAAAGGTGATCTATCGCTTCCCAGCCCTGCTAACTTATAGCAGACAGAAAGTGATGGAAAGCATAGATTTCCTTCTTGAATTGGGCCTATCTGAAGAGAATATAGGTAAGATTTTAACTCGTTGCCCCAATATCGTTAGTTATAGTGTAGAGGACAATCTCAGACCTACGGCGAAGTACTTCCGTTCTTTGGGGGCTGATGTTGGCATTCTTCTATTCAGATGCCCACAGAATTTTGGACTTAGCATTGAGGCCAACCTGAAACCTATAACAGCATTTTTCTTGGAGAGGGGATATACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGATACCCAAACTCTGAGCTGGTTAAGTTTCCTCAGTATTTTGGATACAGTTTAGAGAAAAGGATTAAACCTAGATTTGCAATCATGAAGAAATCTGGGGTAAAGTTACTGCTGAACCAGGTTCTTTCTCTGTCAAGCAGCAACTTTGACAAGGCCTTGAAAAAGAAAATGAAAAAAATGCAAGATGGTTAG 1416 0.4131 MKTFSSIQLPHHFYCARFFSHTTTRTQLSFPAKVFICQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLALFLKKQGLSNAVAARTINKSDLFIDHLVSKLHSKHRSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPNPPVKDKSAVPVPPSSPLLDSKKLKAVSLVSETDPDGGNLRPHIVYLMELGMDIEQIRSITHRFPAFAYYSLEGKVKPVVEFFLELGVPREHIPIILSKRPQLCGFSLSENLKPTMKFLESLGIDKKQWPKVIYRFPALLTYSRQKVMESIDFLLELGLSEENIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGADVGILLFRCPQNFGLSIEANLKPITAFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPNSELVKFPQYFGYSLEKRIKPRFAIMKKSGVKLLLNQVLSLSSSNFDKALKKKMKKMQDG 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01682 471 Pfam mTERF 184 364 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 Pfam mTERF 54 301 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 Pfam mTERF 302 457 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 PANTHER CGI-12 PROTEIN-RELATED 146 462 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Vimu8g01682 471 Gene3D Transcription termination factor 3, mitochondrial 243 467 IPR038538 -
Vimu8g01682 471 FunFam Transcription termination factor MTERF5 chloroplastic 247 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01682 Vimu-Chr8 22663523 22666384 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu8g01682 mTERF 1.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01682 K15031 - gmx:100781900 784.637