Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01677 ATGGTGTTGGGATGGAGGAGGAGGAAGGGAAACGGCAAGCACAGCAAAGGTGGGAAACCCGTGATGGAGTTGGTGGTTCCGAACCACTTCAGGTGTCCGATTTCTCTTGACATGATGAAGGATCCTGTGACACTCTCAACTGGGATAACCTACGACAGGGAGAATGTGGAGAGGTGGTTTGAAGAAGGGAACATCACATGTCCGGTTACCAACCAGGTTGTGAGAAACTTTGACATGATTCCAAACCACTCTCTCAGGATGATGATCCAAGATTGGTGTGTGGAGAACAGGCAACATGGGGTGGAGAGGATTCCAACACCAAGAATACCAATCAGCCCAATTGAGGTTGCTGAGCTTCTGATGCAAGTGAAGAACTCGGCAAGGCGTTTGGACCAATACGGCTGTCTTGAATTGGTGCAGAAAATGAAGAAATGGGGTGAGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGAGAATGGAGCACCTGTGGCATTGGCTTCATCGTTTGATGCATTTGCCAATGACTCAGTGGAGAGAAACGTGGCGGTTCTTGAGGAGATTCTTGCAGCTCTGAATTGGATGTTTCCACTTCAACTAGAGGCACAGAAATCCTTGGGATCTTTGGCTTCTCTAAGGTGCATGGTATGGTTCTTGAAGCACCAAGATCTCTCGGGGAAAGAGAAGTCCATTGTGGCATTGAAAGAGCTTCTTTCATTTGGAGATGTGCAGCATGTGGAGGCTTTGTCACATATTGAAGGGGTGAATGAGCTCTTGGTGGAGTTCATCAACAAGAGGGTCAGTCCAACCATCACAAAAAGCTCATTGAGGGTGGTTTGGTACATGGTCTCATCCTCTTCAAATTGCAGTGAGAAAGTGAAATTGGCATTTGTAGAACTTGGTCTGGTTTCTTGTTTGCTTGACATTCTCATTGAGTCAGACAAGAGCAGGTATGAGAATGCTTTGGCCATTTTAGACTCTCTATTCAGCAGTGAAGAAGGAAGAAACAAAGGGTGTGGGAATGATCTAACAGTTCCTCTTTTGGTGAAGAGAATTCTGAGAGTTTCACCTTTGAGCACAGACTATTCTGTCTCTGCCCTTTGGAAGCTTTGCAAGTTTGGTGAAAAAGACGAAGGAAGAACCCTTCTTGAAGCCCTTCAAGTTGGTGCCTTTCAGAAGCTCTTGCTGGTTTTGCAGGTTGGTTGTGGTGATGAAACCAAGGAGAAAGCAACAGAACTTCTCAAGTTGATGAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1314 0.4551 MVLGWRRRKGNGKHSKGGKPVMELVVPNHFRCPISLDMMKDPVTLSTGITYDRENVERWFEEGNITCPVTNQVVRNFDMIPNHSLRMMIQDWCVENRQHGVERIPTPRIPISPIEVAELLMQVKNSARRLDQYGCLELVQKMKKWGEESERNKRCIVENGAPVALASSFDAFANDSVERNVAVLEEILAALNWMFPLQLEAQKSLGSLASLRCMVWFLKHQDLSGKEKSIVALKELLSFGDVQHVEALSHIEGVNELLVEFINKRVSPTITKSSLRVVWYMVSSSSNCSEKVKLAFVELGLVSCLLDILIESDKSRYENALAILDSLFSSEEGRNKGCGNDLTVPLLVKRILRVSPLSTDYSVSALWKLCKFGEKDEGRTLLEALQVGAFQKLLLVLQVGCGDETKEKATELLKLMNPYRAELECIDSDYKNVKRSF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01677 437 PANTHER WDSAM1 PROTEIN 22 417 IPR045185 GO:0061630
Vimu8g01677 437 FunFam RING-type E3 ubiquitin transferase 26 97 - -
Vimu8g01677 437 MobiDBLite consensus disorder prediction 1 15 - -
Vimu8g01677 437 MobiDBLite consensus disorder prediction 1 20 - -
Vimu8g01677 437 SUPERFAMILY RING/U-box 22 102 - -
Vimu8g01677 437 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Vimu8g01677 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Vimu8g01677 437 CDD RING-Ubox_PUB 27 79 IPR045210 -
Vimu8g01677 437 Gene3D - 116 417 IPR011989 -
Vimu8g01677 437 SUPERFAMILY ARM repeat 180 384 IPR016024 -
Vimu8g01677 437 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Vimu8g01677 437 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01677 Vimu-Chr8 22624450 22626646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01677 5 437 U-box Gene Family AT5G37490 43.311 5.97e-113 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01677 - - gmx:100794340 768.074