Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01669 ATGGAATCTGAGAGGCCTAACACTACTATTGAGACCTACCAACACCAACACCAACTACAACAACAAGATGATGACGACGAAGAAGAAGAAGAAAACAATGAGATCCTCAAGAGAAGAATCTCCAGCCACCCTCTCTATGAACTGCTGGTTAAAGCTCACCTCGACTGTTTGAAGGTCGGTGACATTTCCAACCTGGAGAGAGAGCTGAAGATAGATCAGATGCAAGCAACAGAGAAGCAAAACTTGGGCATGTTCAGCCAATCTGAGCTTGATCTCTTCATGGAAGCATATTGCTTGGCACTTGGGAAGCTTAAAGAAGCAATGGTGGAACCACAACAGAAGTCTATGGCTTTCATAAACAACATGCATTCTCAACTTAGAGAGATCACTAAGCCAACTTTGCCTGCACCTTCTTCTGAATCTCCACCACCTTCTGCTTCTTCTAGTCACTGCAAATTCTCAATAAATTAG 471 0.4331 MESERPNTTIETYQHQHQLQQQDDDDEEEEENNEILKRRISSHPLYELLVKAHLDCLKVGDISNLERELKIDQMQATEKQNLGMFSQSELDLFMEAYCLALGKLKEAMVEPQQKSMAFINNMHSQLREITKPTLPAPSSESPPPSASSSHCKFSIN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01669 156 SMART KNOX1_2 34 80 IPR005540 GO:0003677|GO:0005634
Vimu8g01669 156 SMART KNOX2_2 80 131 IPR005541 GO:0003677|GO:0005634
Vimu8g01669 156 Pfam KNOX2 domain 88 130 IPR005541 GO:0003677|GO:0005634
Vimu8g01669 156 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 16 131 - -
Vimu8g01669 156 MobiDBLite consensus disorder prediction 1 17 - -
Vimu8g01669 156 Coils Coil 19 39 - -
Vimu8g01669 156 MobiDBLite consensus disorder prediction 1 34 - -
Vimu8g01669 156 MobiDBLite consensus disorder prediction 131 156 - -
Vimu8g01669 156 Pfam KNOX1 domain 36 60 IPR005540 GO:0003677|GO:0005634
Vimu8g01669 156 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01669 Vimu-Chr8 22559951 22562208 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01669 34 126 Homeobox Transcription Factor Family AT4G08150 38.000 1.48e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01669 - - aprc:113868091 205.297