Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01656 ATGCAACATTCTCACAAACTCTTTCCCACCATTCTCTTTCTCTTTTCCTTCTTTTCTTCAACACTCTCCGACCTCTCGTCGGAGCGCGCGGCGCTCCTCGCCCTGCGCTCCGCCGTGCGCGGCCGTACGCTCCTCTGGAACACCACCTTCCGCTCGCCTTGCGTCTGGGCCGGCGTCCAATGCGATGCCGCCAATGCCACTGTGGTGGAGCTTCACCTCCCTGCCGTCGCTCTCTCCGGCGAGCTTCCGGACGGTGTGTTCCCGGAGCTCCCCAACCTCCACACCCTCAGCCTCCGCGTCAACTCCCTCTCTGGCGCCCTCCCCGCCGACCTTGCTGCCTGCACCGCCCTCCGCAACTTATTCCTCCAACAGAACCACTTCGCCGGCGAGGTGCCGGCGTTTCTCTCCGGCATGACTGGCCTCGTCCGGCTCAATTTGGCCTCCAACAACTTTTCCGGCCCATTTCCGGCCCGGTTCGGGAACCTCACCCGGTTGAGGACCCTTTTCCTTGAGAATAATCGGCTCACTGGTTCGTTACCCGGTTTGGAAGAACTCGGTGAATTGGCTCAGTTTAATGTCTCTTACAACATGTTAAACGGTTCTGTTCCTAAAAAGTTGCAGACTTTTGATAAAGATTCGTTTTTGGGCAATACCCTTTGTGGGAAGCCACTTGGGATTTGTCCCTGGGATGATGGGGGTGGCGAGAATGGTGTAAATGGGAGTTCAAATTCAAGTGGGGTTGGAGGAGGTGGAGGGAGTGTGATGGGAGGGGAAAAGAAGAAGGGGAAGCTTTCTGGGGGTGCAATTGCAGGGATTGTTGTTGGCTGCGTGGTGGCTCTTTTGTTGGTTCTCTTTGCTTTGATTATTTTGTGTAGAAGTGGGAACAAGACTAGGAGTGTTGATAATGTTAGCAACGTGGTGGGATTGAAGGAGGAGCCTCAACAGCATGGGGAGGTGGGAATTGAGGGTGGTAATGTGGAGAGTGGTGGTGGTGGTGGTGGGGATTCGGTGGCCGCAGCGGCGGCAGTGGCGGCAGTGGGTGGGAATGGAGTTGGCGGTGGAAGTGGTGGAGATAAGAAGTTGGTGTTTTATGGGAATAAAGTGAAGGTGTTTGATTTGGAGGATTTGCTAAGGGCTTCTGCAGAGGTGTTGGGAAAAGGAACTTTTGGAACCACCTATAAGGCTGTTTTAGAGGATGGGCCTGTGGTGGCTGTGAAGAGGCTGAGGGATGTGACGGTTTCGGAGAAGGAGTTTAAGGAGAAGATTGATGGGGTGGGAGTGATGGATCATGAGAATTTGGTACCTCTCAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACATGCCAATGGGAAGCCTATCTGCAATTCTGCATGGAAACAAAGGAGCTGGTAGAACACCGTTGAATTGGGAAATGAGATCAGACATTGCATTAGGAGCTGCTCGTGGCATTGAGTACCTACATTCACAAGGGCCTAGTGTTTCTCATGGAAACATAAAGTCCTCCAACATCCTCCTAAGCAAATCCTATGATGCCAGGGTGTCTGATTTTGGGCTTGCACACCTTGTTGGCCCTTCATCCACACCCAACAGGGTGGCCGGCTACCGTGCCCCCGAAGTAACCGATACACGACGAGTTTCTCAGAAGGCTGATGTATACAGCTTTGGAGTGTTGCTCTTGGAACTTCTGACTGGAAAGGCTCCTACTCATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCAAGATGGGTCCAATCAGTGGTTAGAGAGGAATGGAGTTCAGAGGTGTTTGATATTGAACTCCTTAGGTATCAGAATTCTGAAGAGGAAATGGTTCAGTTGTTGCAACTTGCAGTGGATTGTGTAGTTCCATACCCTGGAAACCGCCCTTCAATGTCTCAAGTGAGACAACGCATGGAAGAGTTTCATAGGTCTAGTAGTACCATGAAAGAGGGTACTCAAGACCAAATCCATCAACCTGATTTGATCGATGATATAGAAGATGTGTCATCTAGATGA 2034 0.5147 MQHSHKLFPTILFLFSFFSSTLSDLSSERAALLALRSAVRGRTLLWNTTFRSPCVWAGVQCDAANATVVELHLPAVALSGELPDGVFPELPNLHTLSLRVNSLSGALPADLAACTALRNLFLQQNHFAGEVPAFLSGMTGLVRLNLASNNFSGPFPARFGNLTRLRTLFLENNRLTGSLPGLEELGELAQFNVSYNMLNGSVPKKLQTFDKDSFLGNTLCGKPLGICPWDDGGGENGVNGSSNSSGVGGGGGSVMGGEKKKGKLSGGAIAGIVVGCVVALLLVLFALIILCRSGNKTRSVDNVSNVVGLKEEPQQHGEVGIEGGNVESGGGGGGDSVAAAAAVAAVGGNGVGGGSGGDKKLVFYGNKVKVFDLEDLLRASAEVLGKGTFGTTYKAVLEDGPVVAVKRLRDVTVSEKEFKEKIDGVGVMDHENLVPLRAYYYSRDEKLLVHDYMPMGSLSAILHGNKGAGRTPLNWEMRSDIALGAARGIEYLHSQGPSVSHGNIKSSNILLSKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDTRRVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWSSEVFDIELLRYQNSEEEMVQLLQLAVDCVVPYPGNRPSMSQVRQRMEEFHRSSSTMKEGTQDQIHQPDLIDDIEDVSSR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01656 677 PANTHER OS05G0588300 PROTEIN 11 650 - -
Vimu8g01656 677 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vimu8g01656 677 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Vimu8g01656 677 Gene3D Transferase(Phosphotransferase) domain 1 453 671 - -
Vimu8g01656 677 FunFam Probable inactive receptor kinase RLK902 25 182 - -
Vimu8g01656 677 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515
Vimu8g01656 677 Pfam Protein kinase domain 381 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01656 677 ProSiteProfiles Protein kinase domain profile. 378 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01656 677 Gene3D Phosphorylase Kinase; domain 1 357 452 - -
Vimu8g01656 677 FunFam Probable inactive receptor kinase At1g48480 453 656 - -
Vimu8g01656 677 MobiDBLite consensus disorder prediction 235 254 - -
Vimu8g01656 677 MobiDBLite consensus disorder prediction 662 677 - -
Vimu8g01656 677 CDD STKc_IRAK 384 647 - -
Vimu8g01656 677 SUPERFAMILY L domain-like 42 208 - -
Vimu8g01656 677 FunFam pollen receptor-like kinase 1 350 452 - -
Vimu8g01656 677 SUPERFAMILY Protein kinase-like (PK-like) 382 644 IPR011009 -
Vimu8g01656 677 Gene3D Ribonuclease Inhibitor 136 227 IPR032675 -
Vimu8g01656 677 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Vimu8g01656 677 MobiDBLite consensus disorder prediction 647 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01656 Vimu-Chr8 22398900 22401399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01656 24 666 Receptor kinase-like Gene Family AT1G48480 58.833 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu8g01656 Pkinase 2.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01656 - - vum:124840126 1110.9