Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01630 ATGAAGAACCTTCTTAAGAAGCTTCATATCATGTCTAACCGATCAGGGAATGAACAAGGGTCTTCTTCATCCAAGGGGAGCAAGTCCAATCTTGGTTCATCTTCATCTTCCAAGAAGGTTTTGCGCTCAAAGTCCACTCAAAGTTCTGAGCAAAAGCCCTTATCTGGGCTCTCCAGTTGGCTGCATTCAGTTGCCAATAGGCAGAGTCCTAGTCCTCCTCCATCTTTGAGCCAGGCAAGGGGCGAGAGAATGGAGCCATCTGATGCAGTGAGCAGTGGTGGTTTGGATGTTGTGTCAGATTCAGCTAGGCTTGATTCAGCGTCTAGTGCTTCAAGGGATCCTGAAGTGGAGGAAGAGTATCAGATACAACTGGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGGTTATACACCAGCTGAAGTTGTGGCCTACCGATTTATCCGTGCTTCACAGAATTACAATGCTCTTGGTTATGATGACAAGATCTTGGATGGTTTCTACGATCTGTATGGGAAATTAACTGAGTCAAACCCTACAAGAATGCCTTCCTTTGTAGATTTGCAACTTCAAGGAACATCAATCTCAGGTAGTGGTACGTGGGAAGCTGTCTTGGTCAATAGGGCTGCTGATTCAAACTTGTTGAAACTTGTGCAAAAGGCCCAGGAGTTGACTGGCAAATCAAGTTCAGATTTTGAAGTTATAGACAGCAATTTGGTTCGCAAGCTTGCAATATTTGTGGCTGACTATATGGGCGGACAAGTTGGAGATCCTGAAAGTATGACAAGAGCATGGAGGAGTCTTAGTTACAGTCTCAAAGCAACCCTTGGTAGCATGTTTTTGCCACTTGGTTCTCTGACTATTGGATTGTCTCGGCATCGTGCATTGTTATTTAAGGTTCTAGCTGATAGTTTGGGCATCCCATGTCGATTGGTGAAGGGGCTGCAATATACAAATTCCGATGATGTGGCAATAAATTTTGTTAAGATTGATGATGGAAGGATAGAAGCTGAATTTGAACATGTGCTTGATTTGAATTTCAGGGAGTACATCGTTGATCTAATGGCGGATCCTGGAACCCTTATTCCATCTGATGCAACTGGATCACAGGTAGAGTGCGATGAATCGTCGTATGTGGCCAGTCCTTCATCTAGAGACCTTGATTCCTCACATGTAGCATCATCCAGCAGTGGTGTTGGAAGTTCATACGAAGAAACTTTGGATTTGGGGATGTTGGACAAAGCAAACAGATCAAAACATTTTACTCATACAGGTAAAGAATCTGATGTAAGCATGCCCTCCACAGTAAAGGAAGAATCAATGCAACCCTTGAATGAATTTAAAAACCCTCACAATGTTGAGAAGATCGCTGAGCAGGAAGCTCATGGCAGACCTAATCATTCCCATGTACATGCAAGATCTCCATCTTGGACTGAAGGGATCAGTTCTCCTGCAGTACGTAAGATGAAAGTCAAAGATGTTTCTCTATACATGATCGATGCTGCAAAGGAGAATCCTCACTTAGCCCAGAGACTTCATGATGTTTTACTTGAAAGTGGTGTGGTTGCTCCTCCAAATCTATTTTCTGAAATTTGTGATGATGACTCAAGTTCCTCAACTGAGGCCAACTTTCCAACAGAAGAAAAAGATGAACATAAGCTGGGAAGTGGACATAAAGAAGCCGAACTTGATGGTAATCTTTTTCAAGCTCGAATTTTGCCTCCTTTGGCTCAAAATAGAGTCCAGAACAAAACAAGTTCTAGTGGTCAGGTGGAGCATTCTAAACCTGTAGAAGGTTTAGGAATCAACCTTCCTCTTTATACAAGGGAACCAGCTGTACAGCATGTACAACCTCAGATAAAATATGGTCAAAATGTACCTGTTGCCGCTGCTGCAGCTGCCGCCGCCGCTGTTGTTGCATCTTCTATGGTAGCTGCAGTGGCAAAATCTAGCATTGACTCAAACATAGATCTCCCAGTAGCAGCAGCTGCTACTGCCACTGCTGCAGCTGTAGTAGCAACCACTGCTGCTGTCAGTAAACAGTATGAGCAAGGCAGTCGAAGCGATGGAGATACAGACAGTGCTGGTTATGACCTGAAGAGTAGTGGTGATGGAGAACATATAGCTTTAGGAGCAAATTCAGAAGGCGAGCGAAGATCTGATAGATCAGTAGTAAGTAATGATAGCACAAAATCTGATTCCGCATTAGATGATCATGATGTTGCTGAGGTTGACATTCCATGGGAGGAAATCTCACTCGGGGAGCGTATTGGACTTGGATCATATGGGGAGGTGTATCGTGGTGAATGGCGTGGAACAGAAGTTGCTGTAAAGAGGTTTCTAGATCAAGATATATCTGGTGAATCACTTGAAGAGTTCAAAACTGAAGTACGAGGAAGTTTGTATAGATTACTTCATAGACCAAACAGTCAGCTAGATGAGCGAAGGCGTTTGAAGATGGCTATTGATGCTGCTCGAGGAATGAACTATTTGCACAACTGCACTCCAGTGATAGTGCATCGGGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTGAAGGTGTGTGATTTTGGCTTATCACGAATGAAGCATAGTACGTTCCTTTCTTCCAGATCAACTGCTGGAACAGCCGAGTGGATGGCTCCTGAGGTGTTGAGAAATGAACCTTCAAATGAGAAGTGTGATGTATATAGCTTTGGGGTCATATTATGGGAGCTCTCTACTCTGCAGCAACCCTGGGGTGGAATGAATCCAATGCAAGTTGTTGGTGCTGTGGGTTTCCAGCATCGCCGTCTTGACATTCCTGATAATGTGGACCCTACCATAGCAGATATTATCAGGAAATGCTGGCAAACAGATCCAAAGTTGAGACCTTCATTTGTTGAAATATTGGCGGCTCTGAAGCCATTACAGAAGACAGTGATTAGTTCTCAAGTGCCTAGACCAAGTGCATTGGGGAAGCATGAGAAGGGTCAGTCATCGCGTGTTATAGAAGACCCAGCAAGATAG 3072 0.4404 MKNLLKKLHIMSNRSGNEQGSSSSKGSKSNLGSSSSSKKVLRSKSTQSSEQKPLSGLSSWLHSVANRQSPSPPPSLSQARGERMEPSDAVSSGGLDVVSDSARLDSASSASRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPGYTPAEVVAYRFIRASQNYNALGYDDKILDGFYDLYGKLTESNPTRMPSFVDLQLQGTSISGSGTWEAVLVNRAADSNLLKLVQKAQELTGKSSSDFEVIDSNLVRKLAIFVADYMGGQVGDPESMTRAWRSLSYSLKATLGSMFLPLGSLTIGLSRHRALLFKVLADSLGIPCRLVKGLQYTNSDDVAINFVKIDDGRIEAEFEHVLDLNFREYIVDLMADPGTLIPSDATGSQVECDESSYVASPSSRDLDSSHVASSSSGVGSSYEETLDLGMLDKANRSKHFTHTGKESDVSMPSTVKEESMQPLNEFKNPHNVEKIAEQEAHGRPNHSHVHARSPSWTEGISSPAVRKMKVKDVSLYMIDAAKENPHLAQRLHDVLLESGVVAPPNLFSEICDDDSSSSTEANFPTEEKDEHKLGSGHKEAELDGNLFQARILPPLAQNRVQNKTSSSGQVEHSKPVEGLGINLPLYTREPAVQHVQPQIKYGQNVPVAAAAAAAAAVVASSMVAAVAKSSIDSNIDLPVAAAATATAAAVVATTAAVSKQYEQGSRSDGDTDSAGYDLKSSGDGEHIALGANSEGERRSDRSVVSNDSTKSDSALDDHDVAEVDIPWEEISLGERIGLGSYGEVYRGEWRGTEVAVKRFLDQDISGESLEEFKTEVRGSLYRLLHRPNSQLDERRRLKMAIDAARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNEPSNEKCDVYSFGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDNVDPTIADIIRKCWQTDPKLRPSFVEILAALKPLQKTVISSQVPRPSALGKHEKGQSSRVIEDPAR 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01630 1023 CDD STKc_MAP3K-like 774 988 - -
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 1 118 - -
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 548 575 - -
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 382 419 - -
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 728 755 - -
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 561 575 - -
Vimu8g01630 1023 ProSiteProfiles Protein kinase domain profile. 768 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01630 1023 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 79 992 - -
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 697 755 - -
Vimu8g01630 1023 Pfam Protein tyrosine and serine/threonine kinase 815 987 IPR001245 GO:0004672|GO:0006468
Vimu8g01630 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 855 867 IPR008271 GO:0004672|GO:0006468
Vimu8g01630 1023 FunFam Serine/threonine-protein kinase CTR1 815 998 - -
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 999 1023 - -
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 10 76 - -
Vimu8g01630 1023 Gene3D Phosphorylase Kinase; domain 1 746 819 - -
Vimu8g01630 1023 Pfam Ethylene-responsive protein kinase Le-CTR1 170 379 - -
Vimu8g01630 1023 SMART serkin_6 768 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01630 1023 Gene3D Transferase(Phosphotransferase) domain 1 820 1000 - -
Vimu8g01630 1023 ProSitePatterns Protein kinases ATP-binding region signature. 774 795 IPR017441 GO:0005524
Vimu8g01630 1023 MobiDBLite consensus disorder prediction 477 496 - -
Vimu8g01630 1023 SUPERFAMILY Protein kinase-like (PK-like) 759 999 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01630 Vimu-Chr8 22137699 22146293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01630 1 1003 MAP Kinase Kinase Kinase AT1G73660 58.102 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu8g01630 EDR1 1.4e-62 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01630 - - vra:106769971 1763.04