Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01624 ATGTGGATGGTTGGTGACAATGAAGGTGGTGATTTCAGTATGGTTGATCATTCTTTCAGTGGAAGGAAACTCAGGCCCCTCATGCCAAGGCCAATGATTTCTTCTAACACTCCACCACCAACAACCACTCTTAGCTTAACTCACCACCATGGCAATGATTTCCCTTCACAATATGATTATCACCATCTTGCCTCAGTGGCAGAACAAAACAAGAGAGAGCAGTTCAATGGTGCAGCACCTGTTGTGGTGAGCTCAAGGTGGAATCCAACCCGAGAGCAACTAAGAGCCCTTGAAGAGTTGTATAGAAGAGGAACAAGGACACCATCTGCTGAGCAAATCCAGCATATCACTGCACAGCTTAGAAGGTTTGGTAACATCGAAGGCAAGAATGTATTCTATTGGTTTCAGAATCACAAAGCCAGGGAAAGGCAAAAACGTCGCCGCCAAATGGAATCAGAGGCTGAAACTCCTGAGAAGAAAGAGTCAGATCGGTATTATGTGTTTAGATTTTCTTTTTCTCGTTCTGATTGTTGCTCATGTCATGTTGTGTTGTTTGTTTTTCCCTTTGTCCACAGCTGCAAAGATGAAGTTGATGTTGGAAATATGTATATTATGGAAAGATCTGCACTAGAGATAGATACTGTGGTTTTCAAATTGATGCGTTTGCATGGCTGCAATTCAAATCCACAGGAATCTGTTTCAACACAGAGGACTGCAAAAGCAGTGGCCGTAGAGAGTAGAACAGTTGGATGGCTCCAATTCGATGAAGGGGAATTACAAGAAAGAAGAAACCTTTTGGAGAGGAATGCCACGTGGCATGTGATGCAGTTACCTTGTCCTTCTCCTGCTGCACCTGTCACACACCTCATAAACAGCCCTCCTAACGCCTCTTCAGCTATCAGTATGGCTACTACAACAACTACAGTAACAACAACAAAAATAGACCCTAACCTCATAAAGACACATGATCTCAGCTTTTACATTTCACCCCAGAGGGAAAACAGTGTTATATACTTAAGCAGTAGCAGTAGTACTAGTGAAGATGATAACTGTGTGGAGTCTCAAACCCTTCAGTTTTTCCCATTAAGGAGTGGTGGTGATGATGTTAGCAGTGACAACATGAGGGATAAAGAGACAGAGATATCAGCTTCAGCAATGAATTGCAATAACTTTACCCCAAGCCAGTTTTTTGAGTTCCTTCCTATGAAAGAGTAA 1215 0.4263 MWMVGDNEGGDFSMVDHSFSGRKLRPLMPRPMISSNTPPPTTTLSLTHHHGNDFPSQYDYHHLASVAEQNKREQFNGAAPVVVSSRWNPTREQLRALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKRRRQMESEAETPEKKESDRYYVFRFSFSRSDCCSCHVVLFVFPFVHSCKDEVDVGNMYIMERSALEIDTVVFKLMRLHGCNSNPQESVSTQRTAKAVAVESRTVGWLQFDEGELQERRNLLERNATWHVMQLPCPSPAAPVTHLINSPPNASSAISMATTTTTVTTTKIDPNLIKTHDLSFYISPQRENSVIYLSSSSSTSEDDNCVESQTLQFFPLRSGGDDVSSDNMRDKETEISASAMNCNNFTPSQFFEFLPMKE 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01624 404 SMART HOX_1 82 149 IPR001356 GO:0003677
Vimu8g01624 404 ProSiteProfiles 'Homeobox' domain profile. 90 145 IPR001356 GO:0003677
Vimu8g01624 404 FunFam WUSCHEL-related homeobox 4 84 151 - -
Vimu8g01624 404 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 68 399 IPR044555 GO:0003700|GO:0099402
Vimu8g01624 404 Pfam Homeodomain 85 144 IPR001356 GO:0003677
Vimu8g01624 404 SUPERFAMILY Homeodomain-like 85 150 IPR009057 -
Vimu8g01624 404 Gene3D - 83 145 - -
Vimu8g01624 404 CDD homeodomain 86 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01624 Vimu-Chr8 22100389 22102614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01624 1 403 Wox Gene Family AT3G18010 36.407 2.29e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu8g01624 Homeodomain 2.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01624 - - gmx:100819541 494.197