Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu8g01620 | ATGAGGGGGACATCTATGACGATCACCATCACATACAGTTTACCAAATTTGGATTTCAGTAAGAGTTCAAGATCAACACATCATGCAGGTGGGGTTGTACATGACATGATTTTTAATATAGTCGTGCTTAATAAGTCTGTGGTGGTTGTCATCATCATAGATGTCTGTTATGTAGACCATAGAATAGTGTCTATGTATGAATGGTTGGATTCCATACCTTTGACGCACTATATTTTAAATGTTTGCAACCACAGGTGGTTGAATTATGAAGATCCTTTGGTCAACCAAGGTGCATGGACTAAGGAAGAGGACAAGTCCCTTTTACTTATTGTCCAAGATATGGGCATCAGGAACTGGTTCAATATAGCTTCATCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGTCACGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATGCTCAACTATGTTCTGCAGTGACATATTTTGGTGATAGCAATTGGCAGTGCGTGGCTTCTGTTCTAGAACGGCGGACAGGAACCCAGTGCTCAAATAGGTTGGTTAGCTATTTAAATTGCGTTCCATATCTGTAA | 606 | 0.4043 | MRGTSMTITITYSLPNLDFSKSSRSTHHAGGVVHDMIFNIVVLNKSVVVVIIIDVCYVDHRIVSMYEWLDSIPLTHYILNVCNHRWLNYEDPLVNQGAWTKEEDKSLLLIVQDMGIRNWFNIASSLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDAQLCSAVTYFGDSNWQCVASVLERRTGTQCSNRLVSYLNCVPYL | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu8g01620 | 201 | CDD | SANT | 151 | 195 | IPR001005 | - | |
| Vimu8g01620 | 201 | PANTHER | SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 | 82 | 191 | - | - | |
| Vimu8g01620 | 201 | SMART | sant | 148 | 197 | IPR001005 | - | |
| Vimu8g01620 | 201 | SMART | sant | 95 | 145 | IPR001005 | - | |
| Vimu8g01620 | 201 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 91 | 147 | IPR017930 | - | |
| Vimu8g01620 | 201 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 152 | 199 | IPR017930 | - | |
| Vimu8g01620 | 201 | CDD | SANT | 98 | 143 | IPR001005 | - | |
| Vimu8g01620 | 201 | ProSiteProfiles | Myb-like domain profile. | 91 | 143 | IPR001005 | - | |
| Vimu8g01620 | 201 | ProSiteProfiles | Myb-like domain profile. | 144 | 195 | IPR001005 | - | |
| Vimu8g01620 | 201 | Gene3D | - | 94 | 142 | - | - | |
| Vimu8g01620 | 201 | Gene3D | - | 143 | 196 | - | - | |
| Vimu8g01620 | 201 | Pfam | Myb-like DNA-binding domain | 99 | 160 | - | - | |
| Vimu8g01620 | 201 | SUPERFAMILY | Homeodomain-like | 82 | 141 | IPR009057 | - | |
| Vimu8g01620 | 201 | SUPERFAMILY | Homeodomain-like | 128 | 197 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu8g01620 | Vimu-Chr8 | 22055199 | 22055985 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu8g01620 | 82 | 190 | MYB-Related Transcription Factor Family | AT3G18100 | 60.550 | 3.59e-44 | 154 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Vimu8g01620 | Myb_DNA-bind_6 | 1.8e-16 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu8g01620 | K09422 | - | gmx:778073 | 199.519 |