Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01618 ATGGGCATCAAGGATCTTCTGAGGTTCATGAAACCTTACATTGAACCTTTCCACATCCATAAGTATGCCGGAAAACGCGTGGGTATTGATGCGTACTCGTGGCTTCATAAAGGGGCTTATTCGTGTAGTATGGATCTTTGTCTTGATTCCGACAGTGTAAGGAAGTTGCGATACATTGAATACTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCGGTTGTTGTTTTTGATGGTGGCAATGCTCCTTGCAAGGCAGCAACTGAGGAAGAAAGGAACAGAAAAAGAAGGGCTAATCGAGATTTGGCAATGACGAAGCTCAAAGAAGGGAATGTTGCTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTGAATATTACTCCGGTTATGGCACATAAGCTAATTCAGACCCTGAAATTGGAGAAAATTGAGTTCGTTGTTGCTCCATACGAAGCAGATGCTCAGTTAGCGTACATGTCTCACCTTGGAGTAGAAAATGGTGGGGTTGCAGCAGTGATCACTGAAGATAGTGATCTTATAGCTTATGGTTGTCCAGATATTATTTTTAAGATGGACCGAAATGGGAATGGTGAAAGAATAGAGTTAGAGAAGGTATTTTCGGCTGAGTTTGGTAGACCTTCGTTTCGGAGTTTCAACATGGAACTTTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTGGTTTCCAAGTATCGGAACCTAGATCGTATATTGTCTGTTCTTAAACTCGAGAAAGGCGACCAAATGCCTGAAGATTATGCCAAAACCTTTCAAGAGGCTGTTGCAGTTTTTCAGTATGCTCGAATATATGATACCAATGCCAAAAAACTGAAACACATGAAGCCTCTTCCACAAAATTTTATTGAGTCACATGATGGGAATCTCGATTTCTTGGGGCCAGAAGTTCCCCCATCTATAGTCAAAGCAATTGCTGAAGGAAACTTGAATCCATCAACTAAGAAAGCCTTTGATGAGTCTGAATCTTCTAGATTTCCTCTGCACCCCAATGATCTCCAAAGCTTTGATCAAGTCCAGAAAGCTGAAGTTCCTACACCATCTAGGCCAAAGAATAGCTTTTCAATCATTGCTTCCCAGTACACCAGAGAAAATAGTACAGGCAAGCGAAAACTTTGGATATTGACAAGGCTCTTAGATGAAGAGAAGTATTCCAATGAATTCTTGGACCTTAGAAAACTAATCATGCCTTTGGGAACAATTAGAACAGAAGAAAAGACAACTGTATCTGATGACACTCCTTTAAAGGTTCCTGATAACAATCCATTTAGGATAAGAAGAAATGAGGAAAGATATCAGACAAAGGACAATGTTGAAAATATTTCTGTTGCAAGCAGCTTGGAATATACTGACTTGTGCATGTCTCCAGATAACTTTCAAGAAGAGGGGTCTGAGGGGAATCTCTTAAAGAAAAGAAAATTTCAGAACACTTTATCAGATAAAGCTGAAGCCACCTATGAACCAGTTTCAGTAGTGACTGAAGCTGAAAAATCTGATGTATGTTTGGCAGTGGAATCCCCAGAAAGTGTAACTTCTGAGACCAAGGTAATTACTGATTTGAAAGGAAGAAGTGAAAGTAAAAAGAAATCCAATAGAAGAAGCAACAGCAAGAAAACGGGGAGTATTAACAACAGAACGCTTTTGCATTTCTTTTCTAGAGTGTAA 1752 0.4007 MGIKDLLRFMKPYIEPFHIHKYAGKRVGIDAYSWLHKGAYSCSMDLCLDSDSVRKLRYIEYFMHRVNLLRFYKITPVVVFDGGNAPCKAATEEERNRKRRANRDLAMTKLKEGNVAAASELFQRAVNITPVMAHKLIQTLKLEKIEFVVAPYEADAQLAYMSHLGVENGGVAAVITEDSDLIAYGCPDIIFKMDRNGNGERIELEKVFSAEFGRPSFRSFNMELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKGDQMPEDYAKTFQEAVAVFQYARIYDTNAKKLKHMKPLPQNFIESHDGNLDFLGPEVPPSIVKAIAEGNLNPSTKKAFDESESSRFPLHPNDLQSFDQVQKAEVPTPSRPKNSFSIIASQYTRENSTGKRKLWILTRLLDEEKYSNEFLDLRKLIMPLGTIRTEEKTTVSDDTPLKVPDNNPFRIRRNEERYQTKDNVENISVASSLEYTDLCMSPDNFQEEGSEGNLLKKRKFQNTLSDKAEATYEPVSVVTEAEKSDVCLAVESPESVTSETKVITDLKGRSESKKKSNRRSNSKKTGSINNRTLLHFFSRV 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01618 583 SMART xpgineu 141 213 IPR006086 GO:0004518
Vimu8g01618 583 CDD H3TH_FEN1-like 223 295 - -
Vimu8g01618 583 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Vimu8g01618 583 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Vimu8g01618 583 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Vimu8g01618 583 FunFam exonuclease 1 218 291 - -
Vimu8g01618 583 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Vimu8g01618 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Vimu8g01618 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Vimu8g01618 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vimu8g01618 583 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Vimu8g01618 583 SMART xpgn3 1 102 IPR006085 GO:0004518
Vimu8g01618 583 MobiDBLite consensus disorder prediction 541 569 - -
Vimu8g01618 583 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Vimu8g01618 583 FunFam Exonuclease 1, putative 1 212 - -
Vimu8g01618 583 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 537 IPR006084 -
Vimu8g01618 583 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Vimu8g01618 583 Gene3D - 218 291 - -
Vimu8g01618 583 Gene3D - 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01618 Vimu-Chr8 22040374 22049957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01618 1 289 Core DNA Replication Machinery Family AT5G26680 25.083 1.90e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01618 K10746 - gmx:100817932 882.863