Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01615 ATGTCAGAACTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGAGAGATTCTGGGTGAAGGTACATACGGGGTTGTGTACAAAGCCATCGATACGCAGACAGGGCAGACTGTGGCTATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACAGCTCTGAGAGAAATTAAACTGCTTAAGGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTTCCACATAAAGGAAATTTACATCTTGTGTTTGCCTTCATGGAGACAGACCTTGAAGCTGTTATACGGGACCGGAATATTGTTCTTTCACCTGGTGATATAAAATCTTACCTTCAGATGACACTTAAAGGCCTTGCTGTTTGCCACAAGAAATGGGTGTTACATAGGGATATGAAACCAAATAATTTATTGATAGGATCTAACGGACAACTGAAACTTGCGGATTTTGGTTTAGCTAGGGTATTTGGAAGCCCAGATCGCAGATTCACTCATCAGGTGTTTGCAAGGTGGTATAGAGCACCTGAACTATTATTTGGTACCAAGCAGTATGGTCCAGGGGTAGATGTTTGGGCCGCAGCCTGTATTTTTGCTGAACTTCTTCTTCGTAGACCCTTCTTGCAGGGTTCAAGCGATATTGATCAATTAGGAAAAATTTTCGCAGCATTTGGAACTCCATCTCCTTCTCAGTGGCCCGATATGATCTACCTACCTGATTATGTTGAATATCAACACGTTCCTTCTCCACCTTTGCGTTCTTTGTTTCCAATGGCAAGTGACGATGGTTTAGATTTGTTGTCAAAGATGTTTACCTATGATCCAAAAGCTAGAATTTCAGTGCAGCAGGCATTAGAGCACAGGTACTTCTCTTCTGCACCTCTGCCCACAGATCCTGTTAAACTTCCAAGACCTGCTCCTAAGAAGGAATCTAAGGTTTCGGATGTAATTTCAAACGACGGTCCTACGGTCTTGTCACCTCCTAGAAAGTCTAGGAGAGTAATGCCAGGGCGTGATGGGTCTGAAGGCAATTCTTTGCAAGGAGATAAGTTTGATGATAGTGTTAATGTCAGACAGGCAGCTGCTGATAATACAGGCAAAAATGAACCAGTTCCAATGTCCCTAGATTTTTCTCTTTTTGGATTGAAACCTCCAAATAGACCTACAATTACCAGGTAA 1191 0.4249 MSELDLSKKVADRYLKREILGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFAFMETDLEAVIRDRNIVLSPGDIKSYLQMTLKGLAVCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSPSQWPDMIYLPDYVEYQHVPSPPLRSLFPMASDDGLDLLSKMFTYDPKARISVQQALEHRYFSSAPLPTDPVKLPRPAPKKESKVSDVISNDGPTVLSPPRKSRRVMPGRDGSEGNSLQGDKFDDSVNVRQAAADNTGKNEPVPMSLDFSLFGLKPPNRPTITR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01615 396 MobiDBLite consensus disorder prediction 351 367 - -
Vimu8g01615 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vimu8g01615 396 MobiDBLite consensus disorder prediction 300 396 - -
Vimu8g01615 396 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01615 396 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Vimu8g01615 396 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Vimu8g01615 396 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01615 396 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Vimu8g01615 396 SUPERFAMILY Protein kinase-like (PK-like) 9 301 IPR011009 -
Vimu8g01615 396 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Vimu8g01615 396 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01615 396 FunFam Cyclin-dependent kinase D-1 5 94 - -
Vimu8g01615 396 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Vimu8g01615 396 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01615 Vimu-Chr8 22009005 22012083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01615 8 395 Core Cell Cycle Gene Families AT1G73690 75.064 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Vimu8g01615 Pkinase 3.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01615 K02202 - gmx:100814263 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01615 8 22009005 22012083 Vimu8g01615 8 22009005 22012083 ECH