Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01601 ATGGCTAGTGTTGTGACACAGAAAGTGAAGCTTCTTGTGGCATTACTTACCCTGCAGCTCTGCTTTGCAGGATATCACATTGTGTCTAGACTTGCACTAAATATTGGAGTCAGCCAAGTTGTTTACCCCGTTTATCGAAATTTGATTGCTTTGCTTTTGTTAAGCCCATTTGCTTATGTGTTAGAGAAGAATCAAAGACCACCCCTCACTTTATCTTTACTGGTTCAGTTCTTCCTACTTGCATTACTGGGGATCACAGCAAACCAAGGGTTTTACTTGCTGGGATTATACTATGCTTCTCCAACGTTTGCTTCTGCATTGCAAAACTCAGTTCCTGCTATCACTTTTGTCTTGGCTTTGGCTTTAAGGCTTGAGGAAGTCAACATCACAAGGAGAGATGGATTGGCAAAAGTTCTTGGAACCATTGCCAGTGTGGGGGGTGCCACAGTAATTACTCTTTACAAAGGTCCCCCTCTTCTTCACCTGCAGATGGACCTAACACAAGGAGACACTTTAGAAGTAGATCAATCAACAAAAACGCAAAATTGGACTTGGGGCTGCATATACTTGCTTGGACATTGTCTGTCATGGGCTGGCTGGATAGTTTTTCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAACCCTCACTTCGTTTACATGCTTCTTTGGATTGATCCAATTCTTAATCATAGCAGCCTTTGCAGAAGATGACTTGGAGAATTGGAAGATACAGTCACTAGAGGAGCTTTTTATTATCCTATATGCTGGAATTATAGCATCTGGTGTTGTCATATCTCTCCAAACATGGTGTATTCAAAAAGGTGGTCCTGTGTTTGTTGCTGTCTTCCAGCCTGTGCAAACTATTCTAGTTGCTGTCATGGCAGCCCTAATTCTTGGTGATCAGTTATACTCAGGAGGGCTTATTGGTGCAATTCTCATTGTGCTTGGTCTATACTTAGTCCTATGGGGCAAAACCAACGAAAAAAAATTGACAGAGTCATCACCATCACTAACAAACCCCTTGCTTAAGGCAGAGGAAGATAATAAAGAAATTGATGCAGCTTCCAAGGACATACCATGA 1086 0.4208 MASVVTQKVKLLVALLTLQLCFAGYHIVSRLALNIGVSQVVYPVYRNLIALLLLSPFAYVLEKNQRPPLTLSLLVQFFLLALLGITANQGFYLLGLYYASPTFASALQNSVPAITFVLALALRLEEVNITRRDGLAKVLGTIASVGGATVITLYKGPPLLHLQMDLTQGDTLEVDQSTKTQNWTWGCIYLLGHCLSWAGWIVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFAEDDLENWKIQSLEELFIILYAGIIASGVVISLQTWCIQKGGPVFVAVFQPVQTILVAVMAALILGDQLYSGGLIGAILIVLGLYLVLWGKTNEKKLTESSPSLTNPLLKAEEDNKEIDAASKDIP 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01601 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 247 327 - -
Vimu8g01601 361 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020
Vimu8g01601 361 Pfam EamA-like transporter family 14 152 IPR000620 GO:0016020
Vimu8g01601 361 MobiDBLite consensus disorder prediction 333 361 - -
Vimu8g01601 361 MobiDBLite consensus disorder prediction 345 361 - -
Vimu8g01601 361 PANTHER WAT1-RELATED PROTEIN 12 335 IPR030184 GO:0016020|GO:0022857
Vimu8g01601 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 45 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01601 Vimu-Chr8 21958829 21960854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01601 4 355 Nodulin-like Gene Family AT3G18200 67.787 2.69e-176 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01601 - - gmx:100812601 622.854