LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu8g01601	ATGGCTAGTGTTGTGACACAGAAAGTGAAGCTTCTTGTGGCATTACTTACCCTGCAGCTCTGCTTTGCAGGATATCACATTGTGTCTAGACTTGCACTAAATATTGGAGTCAGCCAAGTTGTTTACCCCGTTTATCGAAATTTGATTGCTTTGCTTTTGTTAAGCCCATTTGCTTATGTGTTAGAGAAGAATCAAAGACCACCCCTCACTTTATCTTTACTGGTTCAGTTCTTCCTACTTGCATTACTGGGGATCACAGCAAACCAAGGGTTTTACTTGCTGGGATTATACTATGCTTCTCCAACGTTTGCTTCTGCATTGCAAAACTCAGTTCCTGCTATCACTTTTGTCTTGGCTTTGGCTTTAAGGCTTGAGGAAGTCAACATCACAAGGAGAGATGGATTGGCAAAAGTTCTTGGAACCATTGCCAGTGTGGGGGGTGCCACAGTAATTACTCTTTACAAAGGTCCCCCTCTTCTTCACCTGCAGATGGACCTAACACAAGGAGACACTTTAGAAGTAGATCAATCAACAAAAACGCAAAATTGGACTTGGGGCTGCATATACTTGCTTGGACATTGTCTGTCATGGGCTGGCTGGATAGTTTTTCAGGCTCCTGTGGTGAAGAAGTATCCAGCAAAACTAACCCTCACTTCGTTTACATGCTTCTTTGGATTGATCCAATTCTTAATCATAGCAGCCTTTGCAGAAGATGACTTGGAGAATTGGAAGATACAGTCACTAGAGGAGCTTTTTATTATCCTATATGCTGGAATTATAGCATCTGGTGTTGTCATATCTCTCCAAACATGGTGTATTCAAAAAGGTGGTCCTGTGTTTGTTGCTGTCTTCCAGCCTGTGCAAACTATTCTAGTTGCTGTCATGGCAGCCCTAATTCTTGGTGATCAGTTATACTCAGGAGGGCTTATTGGTGCAATTCTCATTGTGCTTGGTCTATACTTAGTCCTATGGGGCAAAACCAACGAAAAAAAATTGACAGAGTCATCACCATCACTAACAAACCCCTTGCTTAAGGCAGAGGAAGATAATAAAGAAATTGATGCAGCTTCCAAGGACATACCATGA	1086	0.4208	MASVVTQKVKLLVALLTLQLCFAGYHIVSRLALNIGVSQVVYPVYRNLIALLLLSPFAYVLEKNQRPPLTLSLLVQFFLLALLGITANQGFYLLGLYYASPTFASALQNSVPAITFVLALALRLEEVNITRRDGLAKVLGTIASVGGATVITLYKGPPLLHLQMDLTQGDTLEVDQSTKTQNWTWGCIYLLGHCLSWAGWIVFQAPVVKKYPAKLTLTSFTCFFGLIQFLIIAAFAEDDLENWKIQSLEELFIILYAGIIASGVVISLQTWCIQKGGPVFVAVFQPVQTILVAVMAALILGDQLYSGGLIGAILIVLGLYLVLWGKTNEKKLTESSPSLTNPLLKAEEDNKEIDAASKDIP	361

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu8g01601	361	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	247	327	-	-
	Vimu8g01601	361	Pfam	EamA-like transporter family	185	323	IPR000620	GO:0016020
	Vimu8g01601	361	Pfam	EamA-like transporter family	14	152	IPR000620	GO:0016020
	Vimu8g01601	361	MobiDBLite	consensus disorder prediction	333	361	-	-
	Vimu8g01601	361	MobiDBLite	consensus disorder prediction	345	361	-	-
	Vimu8g01601	361	PANTHER	WAT1-RELATED PROTEIN	12	335	IPR030184	GO:0016020\|GO:0022857
	Vimu8g01601	361	SUPERFAMILY	Multidrug resistance efflux transporter EmrE	45	152	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu8g01601	Vimu-Chr8	21958829	21960854	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu8g01601	4	355	Nodulin-like Gene Family	AT3G18200	67.787	2.69e-176	493

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu8g01601	-		-	gmx:100812601	622.854

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