Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01600 ATGGACAAGAAGTCAGGGGGTTTTGTGAGCTCAGATGGACGATTGTTAGGGCGTCTTGAAGTTTCTAGAGCTTTTGGAGATCGCCAGTTTAAAAAGGTAGGCCTTGTTGCAAGCCCGGATGTCTATACTTTTGAAGTTACAGATACTGAGCATTTCATCATTCTTGGCTGTGATGGCTTGTGGGGGGTATTTGGTCCCAGCGATGCTGTTGATTTTGTTCAGAAGTTATTGGATGAGGGGTTACCTGTTGCCACCGTGTGCCGTCGTCTTGTAAGGGAGGCTGTTCGTGAGCGTCGCTGTAAAGATAACTGCACTGCCATTATTATTGTATTTAAGCACAAATAA 345 0.4522 MDKKSGGFVSSDGRLLGRLEVSRAFGDRQFKKVGLVASPDVYTFEVTDTEHFIILGCDGLWGVFGPSDAVDFVQKLLDEGLPVATVCRRLVREAVRERRCKDNCTAIIIVFKHK 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01600 114 PANTHER PROTEIN PHOSPHATASE 2C 3 109 IPR015655 GO:0004722|GO:0006470
Vimu8g01600 114 SUPERFAMILY PP2C-like 4 112 IPR036457 -
Vimu8g01600 114 CDD PP2Cc 3 111 IPR001932 -
Vimu8g01600 114 Pfam Protein phosphatase 2C 4 99 IPR001932 -
Vimu8g01600 114 ProSiteProfiles PPM-type phosphatase domain profile. 1 111 IPR001932 -
Vimu8g01600 114 Gene3D - 2 114 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01600 Vimu-Chr8 21955492 21956588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01600 3 63 PP2C-type Phosphatase Gene Family AT1G18030 68.852 7.26e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01600 K17500 - gmx:100815852 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01600 8 21955492 21956588 Vimu8g01600 8 21955492 21956588 ECH