Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01580 ATGAAGTGGAGAAGACCAAGAAACCAATTCGGATGCCCCATTTCAGAAACTGATCCAAATCCTCAAATCCCTTCTACAATCCAATCATCTCACACCAAATTCACCATCTCTTCTCTCTTATCTTCATTCTCCACCTCTAATGAAACCACACATGTCAGAGACCAAAACAGCACCAAAAACAGCAAAAAATTCTCTACAGCAAGCTTCAGAGGACTCGGTTGCACTGTCAGAGCATCACAGAAGGTCTCTGTGCCCACGGTGATCCGGTCCTCAGCGGATTGGGAAGGAAAGAGGAACAGGAAGAAAAAGCACAGGAGGAACGGCAACAGTAACAGTAACAAGACATGTGATGGGGTTGTTGATGATGTTTCTGGTGGAACATGTGTGGATTTTCAGGATGTTTGGTGTGGTCCCGGTATTGGGTTCTCAACAGATGCTGCTGCTGCTGCTGCATCTGTGGACTGTGTTGTGGCTAGGAAGGATGTTTCTGCAAGAGGAAAACTTGATGTGGTGGAGAGGGAGCGTTCATCTTACTTTGGAAGGCGCATTGTAAAGCCAGAAAACTTCTCTTTTCTGGATGATGAATCTGATATCTTCACAGCACGTACTGGGTTAGACCCTTTTGGAACTGCTAGATTCTATCGCCACGTTCCACATCCTTCTCCTGATGGTCTTCCTGAGATAATGATAATCCGAGGAAGAAGAATAATAATGGGGGGTCGCTTTAACTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAGCTGGGTGAGAGAATAGGTCATGTCAGCACTGGGCTCAAAGAAGATGAGATGGGACACAACATAAGGAAAGTTAAACTTTCAAGTTCAAATGATGCATCAAAGCATCAAGAAGACAAAAAGTGCAGTGTTTGTCAGGAGGAGTATGAAGCAGGTGATGAGTTGGGGAAATTGAAGTGTGATCACAGTTATCACTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTGTTTCGACCCTAA 1065 0.4394 MKWRRPRNQFGCPISETDPNPQIPSTIQSSHTKFTISSLLSSFSTSNETTHVRDQNSTKNSKKFSTASFRGLGCTVRASQKVSVPTVIRSSADWEGKRNRKKKHRRNGNSNSNKTCDGVVDDVSGGTCVDFQDVWCGPGIGFSTDAAAAAASVDCVVARKDVSARGKLDVVERERSSYFGRRIVKPENFSFLDDESDIFTARTGLDPFGTARFYRHVPHPSPDGLPEIMIIRGRRIIMGGRFNSHDQFRDWRLDVDNMSYEQLLELGERIGHVSTGLKEDEMGHNIRKVKLSSSNDASKHQEDKKCSVCQEEYEAGDELGKLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVFRP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01580 354 SMART ring_2 306 346 IPR001841 -
Vimu8g01580 354 MobiDBLite consensus disorder prediction 13 29 - -
Vimu8g01580 354 Pfam Ring finger domain 305 347 IPR001841 -
Vimu8g01580 354 MobiDBLite consensus disorder prediction 1 29 - -
Vimu8g01580 354 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Vimu8g01580 354 SUPERFAMILY RING/U-box 299 352 - -
Vimu8g01580 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 352 IPR013083 -
Vimu8g01580 354 MobiDBLite consensus disorder prediction 87 114 - -
Vimu8g01580 354 FunFam E3 ubiquitin-protein ligase rnf12-A 273 352 - -
Vimu8g01580 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 19 350 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01580 Vimu-Chr8 21707044 21711633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01580 1 261 C3H Transcription Factor Family AT1G73760 40.000 4.34e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01580 - - gmx:100818517 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01580 8 21707044 21711633 Vimu11g04875 11 68494347 68498235 ECH
Vimu8g01580 8 21707044 21711633 Vimu8g01580 8 21707044 21711633 ECH