Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01571 ACCTTTTACCTCACTCGCCATCAGCATCCCAACGACCCTGCAACTTGTGGTAATTACCTCATGAGATTTCGGTGGGATCTCTTTCAGTGCTGCTTCCCTAGCACATCTTCTGACACATTTCAAAAGCGCAGTAACTTGAAGTGGCCAATCATTCCCTACAAGGAAATTGAAAAGGCCACAAATAATTTTGATCAATCTCGTCATCTTGGAAGTGGAGAAAGAAAGAAAGGCTTTATCAGTCAGTACTACGGAACACTTGAGGATGGACGTGAGGTTACAATCCAGCGCTTTACAGAAGACAAGCGCTACATATTGCAACAGTTTATCAATGAAACTGTTATCCTAAATTACTTACCCCACAAAAATATTGTGTCAATTTACGGATGTACTTCTCATCATGAGGAACCTCTGCTCGTGCATGAATACCTATCCAGTGGAAATCTTGCTGCACATTTTCGAGGTGAAAAGGACGAAAACATTGCACTACCCTGGCTTAAACGATTGGATATAGCCATTGATATTGCAAATGCATTGGCCTATCTTCACTATTACGGCATCATCCACCGCAATGTGAAATCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGGTAACCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTTGACACCACCCATGTTACTAGTGATAGAGTAGGTTCAAGTGGTTATATAGACCCAGAGTATTTGACAAAAGGCCAGCTTAGTGTGAAAATTGATGTTTATAGCTTTGGAGTGGTGTTGTGTGAGCTTCTATCATCAAAGCTTTCAGTATTCCATATTATGAATGAGGAGGATAATCTTGATACCCTTTTAAGAAGAAAAATTGAAAACAAAACTTTGGTGGAGCTGTTTGATCCAAGACTTGGGTTCCAATCAAACCTTAACATCAAGCAGTTGATGACTGCTACAGCTGAGCTTGCAGTTCTATGTATGAAATGTCCACAAGAATCGAGGCCAAACATGGAACAGGTGCTAGAGATTCTCAATGAAATGAAGCAAGGGAGATATGTTTTATTACCGTCTTATAATCCATACATTTCAGCTTTGAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACTAACAATTTTGGCACCTGCCTTGGTAAGGGAGGGTTTGGCAGCGTATATTATGGAAAACTTAAAGATGGACTAGAGGTTGCAATAAAATGTTTCCATGACGAGAATGAGACAGAAGAGACCATTAAGCAATTCATGAAAGAATCTGATATCTTAGGTCTCTTGCACCACCAAAATCTGGTCTCACTCTATGGCCGCACTTCTCGCCATTGCAAGAAACACATGCTAGTGTATGAGTACATCTCCAATGGCACACTTTCCAAACATCTTCATGAGTCATCCAGTGATAAACTACCATGGCAAACTAGATTGAATATTGCCATTGAAACTGCAACTGCATTGGTATTTCTTCATGACTCAAGTGTCATCCACCGTGATGTGAAAGGGAGTAACATTCTGTTGGATGAAAATTTTACTGTTAAAGTTGCTGATTTTGGATTCTCACGATCTCTTCCAGATCATGTTACTCATGTTACAACTATTCCAGTAGGAACTCGTGCTTATATAGATCCTGACTACTATATATCTGGAAGGGTCAGTAACAAAAGTGATGTCTATAGTTTTGGCGTGGTCTTGTTTGAACTCATATCATCTATCCACCCAAGTTTGGTTGCAGGCACAGATAATGAGACTCTGGCACAATTTGCAAAGAGAAAAATCTTGAACAATGAATTAAACGAGATAGTTGATCAAAGCTTTTCCTGTGGTTCTGACGATAACATTTTGGAAATGATATCAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAGTTCAGACCATCCATGAAACAGGTGCTAGAGACCTTGGAGGGCATAAGTAAAGGAAAATGGGGATTCAACCAGATGACATAG 1983 0.4009 TFYLTRHQHPNDPATCGNYLMRFRWDLFQCCFPSTSSDTFQKRSNLKWPIIPYKEIEKATNNFDQSRHLGSGERKKGFISQYYGTLEDGREVTIQRFTEDKRYILQQFINETVILNYLPHKNIVSIYGCTSHHEEPLLVHEYLSSGNLAAHFRGEKDENIALPWLKRLDIAIDIANALAYLHYYGIIHRNVKSSNILLDVNFSAKLGNLHLSCKLPDGVPVDTTHVTSDRVGSSGYIDPEYLTKGQLSVKIDVYSFGVVLCELLSSKLSVFHIMNEEDNLDTLLRRKIENKTLVELFDPRLGFQSNLNIKQLMTATAELAVLCMKCPQESRPNMEQVLEILNEMKQGRYVLLPSYNPYISALKIFHHAELEEATNNFGTCLGKGGFGSVYYGKLKDGLEVAIKCFHDENETEETIKQFMKESDILGLLHHQNLVSLYGRTSRHCKKHMLVYEYISNGTLSKHLHESSSDKLPWQTRLNIAIETATALVFLHDSSVIHRDVKGSNILLDENFTVKVADFGFSRSLPDHVTHVTTIPVGTRAYIDPDYYISGRVSNKSDVYSFGVVLFELISSIHPSLVAGTDNETLAQFAKRKILNNELNEIVDQSFSCGSDDNILEMISAVAELAFQCVQCPKEFRPSMKQVLETLEGISKGKWGFNQMT 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01571 660 SUPERFAMILY Protein kinase-like (PK-like) 357 650 IPR011009 -
Vimu8g01571 660 Gene3D Phosphorylase Kinase; domain 1 354 453 - -
Vimu8g01571 660 Gene3D Phosphorylase Kinase; domain 1 35 142 - -
Vimu8g01571 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Vimu8g01571 660 Gene3D Transferase(Phosphotransferase) domain 1 143 350 - -
Vimu8g01571 660 Gene3D Transferase(Phosphotransferase) domain 1 454 656 - -
Vimu8g01571 660 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 362 653 IPR044652 GO:0004672
Vimu8g01571 660 ProSiteProfiles Protein kinase domain profile. 63 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01571 660 Pfam Protein tyrosine and serine/threonine kinase 377 646 IPR001245 GO:0004672|GO:0006468
Vimu8g01571 660 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Vimu8g01571 660 FunFam Wall-associated receptor kinase 3 454 660 - -
Vimu8g01571 660 ProSiteProfiles Protein kinase domain profile. 375 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01571 660 SMART serkin_6 63 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01571 660 SMART serkin_6 375 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01571 660 Pfam Protein kinase domain 86 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01571 660 SUPERFAMILY Protein kinase-like (PK-like) 43 353 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01571 Vimu-Chr8 21484001 21486628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01571 362 649 Receptor kinase-like Gene Family AT1G25390 50.680 7.75e-87 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu8g01571 PK_Tyr_Ser-Thr 3.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01571 - - vra:106773095 1251.88