Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01570 ATGAAAGAATCTGATATCTTAGGTCTCTTGCACCACCAAAATCTGGTCTCACTCTATGGCCGCACTTCTCGCCATTGCAAGAAACACATGCTAGTGTATGAGTACATCTCCAATGGCACACTTTCCAAACATCTTCATGAGTCTTCCAGTGATAAACTACCATGGCAAACTAGATTGAATATTGCCATTGAAACTGCAACTGCATTGGTATTTCTTCATGACTCAAGTGTCATCCACCGTGATGTGAAAGGGAGTAACATTCTGTTGGATGAAAATTTTACTGTTAAAGTTGCTGATTTTGGATTCTCACGGTCTCTTCCAGATCATGTTACTCATGTTACAACTATTCCAGTAGGAACTCGTGCTTATATAGATCCTGACTACTATACATCTGGAAGGGTCAGTAACAAAAGTGATGTCTATAGTTTTGGAGTGGTCTTGTTTGAACTCATATCATCTATCCACCCAAGTTTGGTTGCAGGCACAGATAATGAGACTCTTGCACAATTTGCAAAGAGAAAAATCTTGAACAATGAATTAAACGAGATAGTTGACCAAAGCTTTTCCTGTGGTTCTGACGATAACATTTTGGATATGATATCAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAGTTCAGACCATCCATGAAACAGGTTCTAGAGACCTTGGAAGGCATAAGTAAAGGAAAATGGGGATTCAACCAGATGACATAG 729 0.4005 MKESDILGLLHHQNLVSLYGRTSRHCKKHMLVYEYISNGTLSKHLHESSSDKLPWQTRLNIAIETATALVFLHDSSVIHRDVKGSNILLDENFTVKVADFGFSRSLPDHVTHVTTIPVGTRAYIDPDYYTSGRVSNKSDVYSFGVVLFELISSIHPSLVAGTDNETLAQFAKRKILNNELNEIVDQSFSCGSDDNILDMISAVAELAFQCVQCPKEFRPSMKQVLETLEGISKGKWGFNQMT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01570 242 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 235 IPR044652 GO:0004672
Vimu8g01570 242 FunFam Wall-associated receptor kinase 3 36 242 - -
Vimu8g01570 242 ProSiteProfiles Protein kinase domain profile. 1 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01570 242 SUPERFAMILY Protein kinase-like (PK-like) 2 232 IPR011009 -
Vimu8g01570 242 Pfam Protein tyrosine and serine/threonine kinase 1 228 IPR001245 GO:0004672|GO:0006468
Vimu8g01570 242 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Vimu8g01570 242 Gene3D Transferase(Phosphotransferase) domain 1 40 238 - -
Vimu8g01570 242 SMART serkin_6 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01570 242 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Vimu8g01570 242 PIRSF ILK 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01570 Vimu-Chr8 21471532 21472260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01570 1 231 Receptor kinase-like Gene Family AT1G25390 51.489 4.14e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu8g01570 PK_Tyr_Ser-Thr 6.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01570 - - vra:106773095 481.87