Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01569 ATGCATTGGCTAATCACCTTTTACCTCACTCACCATCAGCATCCCAACGACCCTGCAACTTGTGGTAATTACCTCATGAGATTTAGGTGGGATCTCCTTCAGTGCTGCTTCCCTAGCACATCTCCTGACACATTTCAAAAGCGCAGTAACTTGAAGTGGCCAATCTTTTCCTACAAGGAAATTAGAAAAGCGACAAATAATTTCGACCAATCTCGTCATCTTGGAAATGGAAAAAGAAAAGGCTTTATCAATCAGTACTACGGAACACTTGAGGATGGACGTGAGATTACAATCCAGCGCTTTACAGAAGACAAGCGCTACATATTGCAGCAGTTTATCAATGAAACTGTTATCCTAAATTACTTACCCCACAAAAATATTGTGTCAATTTACGGATGTACTTCTCATCATGATGAACATCTGCTCGTGCATGAATACCTATCCAATGGAAATCTTGCTGCACATTTTCATGTTGAAAAGGATATAAACATTTTCTTTCCTAAACTACCTTGGCTTAAACGATTGGATATAGCCATTGATATTGCAAATGCATTGGCATATCTTCACTATTACGGCATCATCCACCGCAATGTGAAATCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGGTAACCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTTGACACCACCCATGTTACTAGTGATAGAGTAGGTTCAAGTGGTTATATAGACCCAGAGTATTTGACAAAAGGCCAGCTTAGTGTGAAAATTGATGTTTATAGCTTTGGAGTGGTGTTGTGTGAGCTTCTATCATCAAAGCTTTCAATATACCATATTATCAATGAGGAGGATAATCTTGGTACCCTTTTAAGCAGAAAAATTGAAAACAAAACTTTGGTGGAGCTGTTTGATCCAAAACTTCGGGTCCAATCAAACCTTAACATCAAGCAGATGACTGCTATGGCTGAGCTTGCAGTTCTCTGTATGAAATGTCCACAAGAATCGAGGCCAAACATGGAACAGGTGCTAGAGATTCTCAATGAAATGAAGCAAGGGAGATACGTAACAAACTTTCACTCAACTAAAGGTACAATATCAAAACCATATTATATCCCTTTTCCTCTCTCATGGTTTTCTGGCTTCTATATGTTTTAG 1158 0.3877 MHWLITFYLTHHQHPNDPATCGNYLMRFRWDLLQCCFPSTSPDTFQKRSNLKWPIFSYKEIRKATNNFDQSRHLGNGKRKGFINQYYGTLEDGREITIQRFTEDKRYILQQFINETVILNYLPHKNIVSIYGCTSHHDEHLLVHEYLSNGNLAAHFHVEKDINIFFPKLPWLKRLDIAIDIANALAYLHYYGIIHRNVKSSNILLDVNFSAKLGNLHLSCKLPDGVPVDTTHVTSDRVGSSGYIDPEYLTKGQLSVKIDVYSFGVVLCELLSSKLSIYHIINEEDNLGTLLSRKIENKTLVELFDPKLRVQSNLNIKQMTAMAELAVLCMKCPQESRPNMEQVLEILNEMKQGRYVTNFHSTKGTISKPYYIPFPLSWFSGFYMF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01569 385 Pfam Protein kinase domain 91 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01569 385 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 45 354 IPR044652 GO:0004672
Vimu8g01569 385 SUPERFAMILY Protein kinase-like (PK-like) 44 347 IPR011009 -
Vimu8g01569 385 Gene3D Phosphorylase Kinase; domain 1 43 146 - -
Vimu8g01569 385 ProSiteProfiles Protein kinase domain profile. 68 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01569 385 Gene3D Transferase(Phosphotransferase) domain 1 147 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01569 Vimu-Chr8 21468383 21470951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01569 51 351 Receptor kinase-like Gene Family AT1G25390 46.711 1.66e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu8g01569 Pkinase 5.8e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01569 - - vra:106773095 605.52