Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01568 ATGACGTTTATTGATTGCCTTATGAGAATGAGGTGTAATCTCTTTGAGGGCTGCTTCACTAGCACTTCTGACACATTTCAAAAGCAGAGCAAATGGAAAATCTTGCCCTACAAGAAACTTGCAAAAGTCACAGATAACTTCGATCAGTCTCATTGTCTTGGAAAAAGAGGCTTTGCCACTGAATATTACGTTCAGCTTGGTAATCCAAATAATGAAAAGTCTCTTCTGTTCATTTCCCTTGTTTTAGGAAAACTTGCAGATGGGCGTGAGATTACAATCCAGTGCTTCAACGAAGACAAGCACCACATATTGCAACAGTTTATCAATGAAACTACTATCCTAAATTACTTGCCTCACAAAAATATTGTGTCAATTTATGGATGTGCTTATCATCACGAGGAATCTATGCTAGTCCATGAATACTTATCCAATGGAAACCTTGCTGCTCATCTTAAAACTGAAGACGAAAACACCACACTACCTTGGCTGACACGATTTGACGTAGCCATTGATATTGCAAATGCATTGGACTATCTTCACTATAATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGCAAATCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTCTATGCAGCCCATGTTACTAATGATATAATTGGAACATGTGGTTACATCGACCCAGATTATTTGACAAAAGGCCAGCTTAGTGTAAAAAATGATGTGTATAGCTTTGGGGTGGTGCTGTGTGAGCTTCTATCATCAAAGCTGGCAAAATCCTGGGTTCTGAATGAGGAGGACGATCTCGCTACACTTTTAAGAACAAAAATTGAAAAGCAAGCTGTGGTGGAGCTGTTGGATCCAAGACTTGACTTCCAATCTAACCATAAGATCAAGAGGATGATGACTGCTACAGCTGAGCTTGCACTTTTGTGCATGCAATGTCCACAAGAATTAAGGCCAAGCATGGAACAGGTGCTAGAGATTCTCAAAGGTATAAAGCAAGGGAGACATGAAACAAACGCAACAAAAGCTTTGAAAATCTTCCACCATGGTGAACTTGAAGAAGCTACAAACAATTTTGATACTTGCCTTGGAAAGGGAGGCTATGGCACCGTGTACTATGGTGATATCCTAATCAGAAAACTTAAGGATGGAAGAGAGGTGGCAATAAAATGTTTCCATGAAGAGAGTGAGACAGAAAAGATCATTGAGCAATTCATGAAAGAAACTGAGGTATTGGTTTGGTTGCAGCATAAAAATCTGGTTTTACTTTATGGTCGCACTTCTCGCCATAGCAATAAACACATGCTAGTGTACGAATACATCTCCAATGGCACTCTTTCTAAACATCTTCATGACTCTTCCTGTGATAAACTACCATGGCATACTAGATTGAACATTGCCATCGAAACTGCAACTGCATTAGTATATCTGCATGACTCAGGTATCATCCACCGAGATGTGAAAGGGAGTAACATTCTGTTGGACGAAAATTTTACTGTTAAAGTTGCAGATTTTGGATTCTCACGGTATCTCCCAGATTATGCCACGCACGTTTCCACTATTCCAGTAGGAACTCGTGCTTACATAGATCCTGACTACTATGAATCTGGAAGGGTCTGTGACAAAAGTGATGTCTATAGTTTTGGGGTGGTCTTGTTTGAACTTATATCTTCCAACTCGCCAAGTTTAGTTGAAGGAACAGATTACGTTACTCTTGCACAGTTTGCAAAGAGAAAAATCTTAAACAAGGAATTAAACGCGGTAGTGGATCCAAGCTTTTGGTTTGGTGTTGACAGAAACATGATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGTACTCAGACCTTCCATGAAACAGGTGCTGGAGACCCTTGAGGGCATTAGCAAAGGAACATGGGGATTCAACCAGATTACATAG 1977 0.4026 MTFIDCLMRMRCNLFEGCFTSTSDTFQKQSKWKILPYKKLAKVTDNFDQSHCLGKRGFATEYYVQLGNPNNEKSLLFISLVLGKLADGREITIQCFNEDKHHILQQFINETTILNYLPHKNIVSIYGCAYHHEESMLVHEYLSNGNLAAHLKTEDENTTLPWLTRFDVAIDIANALDYLHYNGIIHRNVKSSNILLDVNFSAKLANLHLSCKLPDGVPVYAAHVTNDIIGTCGYIDPDYLTKGQLSVKNDVYSFGVVLCELLSSKLAKSWVLNEEDDLATLLRTKIEKQAVVELLDPRLDFQSNHKIKRMMTATAELALLCMQCPQELRPSMEQVLEILKGIKQGRHETNATKALKIFHHGELEEATNNFDTCLGKGGYGTVYYGDILIRKLKDGREVAIKCFHEESETEKIIEQFMKETEVLVWLQHKNLVLLYGRTSRHSNKHMLVYEYISNGTLSKHLHDSSCDKLPWHTRLNIAIETATALVYLHDSGIIHRDVKGSNILLDENFTVKVADFGFSRYLPDYATHVSTIPVGTRAYIDPDYYESGRVCDKSDVYSFGVVLFELISSNSPSLVEGTDYVTLAQFAKRKILNKELNAVVDPSFWFGVDRNMMEMITAVAELAFQCVQCPKVLRPSMKQVLETLEGISKGTWGFNQIT 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01568 658 SUPERFAMILY Protein kinase-like (PK-like) 352 648 IPR011009 -
Vimu8g01568 658 SMART serkin_6 47 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01568 658 SMART serkin_6 368 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01568 658 Gene3D Transferase(Phosphotransferase) domain 1 142 358 - -
Vimu8g01568 658 Gene3D Transferase(Phosphotransferase) domain 1 452 652 - -
Vimu8g01568 658 FunFam Wall-associated receptor kinase 3 452 657 - -
Vimu8g01568 658 Pfam Protein tyrosine and serine/threonine kinase 89 339 IPR001245 GO:0004672|GO:0006468
Vimu8g01568 658 Pfam Protein tyrosine and serine/threonine kinase 371 598 IPR001245 GO:0004672|GO:0006468
Vimu8g01568 658 ProSiteProfiles Protein kinase domain profile. 368 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01568 658 ProSiteProfiles Protein kinase domain profile. 47 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01568 658 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 354 651 IPR044652 GO:0004672
Vimu8g01568 658 ProSitePatterns Protein kinases ATP-binding region signature. 374 401 IPR017441 GO:0005524
Vimu8g01568 658 SUPERFAMILY Protein kinase-like (PK-like) 31 342 IPR011009 -
Vimu8g01568 658 Gene3D Phosphorylase Kinase; domain 1 359 451 - -
Vimu8g01568 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Vimu8g01568 658 Gene3D Phosphorylase Kinase; domain 1 19 141 - -
Vimu8g01568 658 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 142 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01568 Vimu-Chr8 21463721 21467133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01568 355 647 Receptor kinase-like Gene Family AT1G25390 51.171 4.11e-86 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu8g01568 PK_Tyr_Ser-Thr 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01568 - - vun:114181918 1223.76