Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01564 ATGTATTTGAATAGTTATGTAATGTCATATATACAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAAGTCACAGCTTCACTCAAAGCATTATACCTGGAGTTCATCTCTTCTCCTATGAAGAACTGGAAGAGGCCACGAATTACTTTGACCCATCTAAAGAGCTAGGAGAAGGGGGCTTTGGGACAGTGTATTTTGGCAAACTGCGAGATGGGCGTTCTGTTGCAGTGAAGAGGTTGTATGAAAACAACTACAGGAGAGTTGCACAGTTCATGAATGAAATCAAAATCCTAACTCGTATTGATCATCCAAATCTTGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGAGAACTTCTGCTTGTATATGAGTACATTCCTAATGGAACTGTTGCAGACCATATTCATGGTGAACGATCTAAACCTGGAACACTCCCCTGGCATATCAGAATGAATATTGCTGTGGAAACTGCAAGTGCACTGAAATTTCTTCATCTCAGAGATATCATCCACAGAGATGTTAAAACCAACAATATTCTTCTTGACAGCAACTTCCGTGTCAAGGTGGCAGATTTTGGACTCTCACGTCTTTTCCCAGACCATGTCACCCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGTTACCAGCTTACTAACAAAAGTGATGTCTATAGTTTTGGAGTGGTGCTGGTTGAACTGATATCATCCCTGCCTGCTGTTGACATCACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCCATTAACAAGATTCACAATCAGACACTGCAAGAGCTTGTGGATCCAAACCTTGGTTTTGAATCAGATTTCAAGGTAAGGAAAATGATAAGTGGTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGCTCCAAAGAGATGAGACCTACAATGGAAGAAGTGGTGGAGACTCTGAAGGATATACAGAGTGATGGAAAGAGCAAAAGCCAGCCTGAGGTAATGGATATCTCAAGCACATCTGATGATGTTGTGTTGCTGAAGGATGATCCGCCTCCACCATCACCAGATTCTAATGCTATAAGCAAGACAACAACACCAAATACTAGTGGATGA 1140 0.4263 MYLNSYVMSYIQSRSLSSDPSSKDTEKGSHSFTQSIIPGVHLFSYEELEEATNYFDPSKELGEGGFGTVYFGKLRDGRSVAVKRLYENNYRRVAQFMNEIKILTRIDHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHIHGERSKPGTLPWHIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPDHVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAINKIHNQTLQELVDPNLGFESDFKVRKMISGVAELAFQCLQSSKEMRPTMEEVVETLKDIQSDGKSKSQPEVMDISSTSDDVVLLKDDPPPPSPDSNAISKTTTPNTSG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01564 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Vimu8g01564 379 SUPERFAMILY Protein kinase-like (PK-like) 37 344 IPR011009 -
Vimu8g01564 379 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 24 131 - -
Vimu8g01564 379 ProSiteProfiles Protein kinase domain profile. 55 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01564 379 ProSitePatterns Protein kinases ATP-binding region signature. 61 83 IPR017441 GO:0005524
Vimu8g01564 379 Pfam Protein kinase domain 58 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01564 379 FunFam Wall-associated receptor kinase-like 20 132 340 - -
Vimu8g01564 379 Gene3D Phosphorylase Kinase; domain 1 26 131 - -
Vimu8g01564 379 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 9 377 IPR044652 GO:0004672
Vimu8g01564 379 SMART serkin_6 55 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01564 379 MobiDBLite consensus disorder prediction 330 379 - -
Vimu8g01564 379 Gene3D Transferase(Phosphotransferase) domain 1 132 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01564 Vimu-Chr8 21447313 21449239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01564 22 379 Receptor kinase-like Gene Family AT1G25390 62.060 1.06e-152 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu8g01564 Pkinase 4.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01564 - - gmx:100800873 641.728