Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01562 ATGACTAATTCATTCAAACTTAAACTCGGTCAAGGTGGTTTTGGTACAGTATACAAAGGAAAGCTACTAACGGGTAGCCCTGTGGCTGTAAAGTTACTGAAAGCATCCAAAAGAAATGGTGAAGAGTTCATCAATGAGGTTGCCAGCATCAGTAGAACATCCCATGTTAATATTGTCACACTTCTTGGATTTTGTTTGGAAGGCTCCAAAAAGGCTCTCATCTATGAGTTTATGTCTAATGGTTCTTTGGATAAGTTCATATACAATAGAGGGCCAGAAAATATTGCATCTTTGACATGGGAGAATTTATATCAAATTGCCATAGGAATAGCTCGAGGGTTGGAGTACTTGCACAGAGGCTGCAACACTAAAATTTTACATTTTGACATAAAGCCACATAATATTCTTTTGGATGAGAATTTTTGTCCTAAAATATCAGATTTTGGACTAGCAAAGCTCTGTCCCAGGAATGAAAGCATTATTTCTATGTCTGATAGAAGAGGAACAATGGGGTATTTTGCTCCCGAAATGGTGAATAGACATTTTGGAGGAGTTTCACAAAAGTCTGATGTGTACAGTTATGGAATGATGCTACTGGAAATGGTAGGAGGAAGGAAGAACATTAATCCTGAAGCTAGTAATACGAGTGAGATATACTTCCCACATTTTGCATACAGAACGCTTGATGTGGATAATGAAGTGAGACCATATGAAGTGATGAATGCAGAAGAAGATGAGATTGCAAAGAGAATGACTGTAGTTGGCTTATGGTGCATTCAATCACTTCCAAATGATAGACCTACAATGAGCAGAGTGGTAGATATGTTGGAAGATAACATGAATTCCTTGGAAATGCCTCCAAAACCTTTGTTTTCTTCTCCTACTAGATCACAAACATAA 900 0.3767 MTNSFKLKLGQGGFGTVYKGKLLTGSPVAVKLLKASKRNGEEFINEVASISRTSHVNIVTLLGFCLEGSKKALIYEFMSNGSLDKFIYNRGPENIASLTWENLYQIAIGIARGLEYLHRGCNTKILHFDIKPHNILLDENFCPKISDFGLAKLCPRNESIISMSDRRGTMGYFAPEMVNRHFGGVSQKSDVYSYGMMLLEMVGGRKNINPEASNTSEIYFPHFAYRTLDVDNEVRPYEVMNAEEDEIAKRMTVVGLWCIQSLPNDRPTMSRVVDMLEDNMNSLEMPPKPLFSSPTRSQT 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01562 299 SMART serkin_6 3 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01562 299 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Vimu8g01562 299 Pfam Protein kinase domain 8 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01562 299 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vimu8g01562 299 CDD STKc_IRAK 9 277 - -
Vimu8g01562 299 PIRSF ILK 4 286 - -
Vimu8g01562 299 SUPERFAMILY Protein kinase-like (PK-like) 8 277 IPR011009 -
Vimu8g01562 299 FunFam PR5-like receptor kinase 78 288 - -
Vimu8g01562 299 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 294 IPR045874 GO:0004672
Vimu8g01562 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vimu8g01562 299 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01562 299 Gene3D Transferase(Phosphotransferase) domain 1 78 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01562 Vimu-Chr8 21433467 21434366 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01562 1 291 Receptor kinase-like Gene Family AT1G66980 60.000 1.52e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01562 Pkinase 3.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01562 - - var:108343960 586.645