Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01560 ATGACTAATTCATTCAAAGTTAAACTTGGTCAAGGTGGTTTTGGTACAGTATATAAAGGAAAACTACTCACGGGTAGTCCTGTGGCCGTAAAGTTACTGAAAGCATCCAAAAGAAATGGTGAAGAGTTCATCAATGAGGTTGCCAGCATCAGTAGAACATCCCATGTTAATATTGTCACACTTGTTGGATTTTGTTTGGAAGGCTCCAAAAAGGCTCTCATCTATGAGTTTATGGCTAATGGTTCTTTGGATAAGTTCATCTACAATAGAGGGCCAGAAAATATTGCATCTTTGAGCTGGGACAATTTATATCAAATTGCCATAGGAATAGCTCGAGGGTTGGAGTAC 348 0.3879 MTNSFKVKLGQGGFGTVYKGKLLTGSPVAVKLLKASKRNGEEFINEVASISRTSHVNIVTLVGFCLEGSKKALIYEFMANGSLDKFIYNRGPENIASLSWDNLYQIAIGIARGLEY 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01560 116 SUPERFAMILY Protein kinase-like (PK-like) 7 116 IPR011009 -
Vimu8g01560 116 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vimu8g01560 116 ProSiteProfiles Protein kinase domain profile. 3 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01560 116 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 116 IPR045874 GO:0004672
Vimu8g01560 116 Gene3D Transferase(Phosphotransferase) domain 1 1 116 - -
Vimu8g01560 116 Pfam Protein tyrosine and serine/threonine kinase 5 116 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01560 Vimu-Chr8 21418874 21421858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01560 1 116 Receptor kinase-like Gene Family AT5G38280 65.254 2.91e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01560 PK_Tyr_Ser-Thr 6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01560 - - vum:124821099 225.713