Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01559 ATGTTTCTTATAGCTCGTAACTCTTCTAATATATCTATTAACACAGGTTCTGCAAGTGGAGCAATGGGAATATTCATCATATGCCTCATAATAGGTTGCAGAAAACGTATCTCATCAACAAGAAAGGAAAATTTTCAGATTACTAACGAGCAAGATATTGAAGTATTCTTAAAAGATCATGGAACTCTAGCACAAAAGAAATATAAATTTTCAGAAGTCAAGAAAATGACGAAGAACTTCACAGTTAAACTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGTTACGCAATGGTTACCAAGTGGCTGTAAAATTATTAAAGGCATCAAAAGGAAATGGCAAAGACTTTATGAATGAGGTTGGCAGTATCAGTAGAACTTCTCATGTTAATGTTGTCCAACTTCTTGGATTCTGTTTAGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCTTGGACAAGTTTATCGGTAATAAGGGAGTAGAAAGCACTCCATCTTTGAATTGGGATAATATGTTGCAAATTGCAAAAGGGATAGCGAGAGGACTAGAGTACCTGCACAAGGGATGCAACACTCGTATTTTACACTTTGACATAAAACCACATAACATTCTTTTGGATGACAACTTCTGTCCCAAGATATCAGACTTTGGGCTTGCAAAACTTTGTCCCGGGAAAGAGAGCACTATCTCCGTTTCAAATGCCAGAGGAACAATAGGATATGTAGCTCCTGAAGTGTGCAACAAACATCTTGGTGGAGTTTCACAAAAATCTGATGTTTATAGCTATGGAATGATGCTACTAGAAATATTGGGAGTGAAAAACAATGTTAATGGAGAAGCCACTGAAACAAGTGAATACTTCCCAGATTGGATATACCGGAAGCTTGAGCAAGATCAAGATTTGAGAACTGATATAGTCACAGAAGAAAAAGAGAAAGAAAGGAGAATGATTACAGTTAGCTTGTGGTGCATTCAAACGTTCCCAAAGGATAGACCTACTATGAGTAGAGTAATAGAAATGTTAGAAGGCAACATGAATTCTCAAGAAATACCCCCAAAACCTGTTCTTTCTTCTCCCACAATTAGATTGGTGCCAGAATTGACCACTAGTTCCTTGCAGTCTGAGTAG 1149 0.3742 MFLIARNSSNISINTGSASGAMGIFIICLIIGCRKRISSTRKENFQITNEQDIEVFLKDHGTLAQKKYKFSEVKKMTKNFTVKLGEGGFGVVYKGELRNGYQVAVKLLKASKGNGKDFMNEVGSISRTSHVNVVQLLGFCLEGKKKALIYEFMPNGSLDKFIGNKGVESTPSLNWDNMLQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDDNFCPKISDFGLAKLCPGKESTISVSNARGTIGYVAPEVCNKHLGGVSQKSDVYSYGMMLLEILGVKNNVNGEATETSEYFPDWIYRKLEQDQDLRTDIVTEEKEKERRMITVSLWCIQTFPKDRPTMSRVIEMLEGNMNSQEIPPKPVLSSPTIRLVPELTTSSLQSE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01559 382 Pfam Protein tyrosine and serine/threonine kinase 81 348 IPR001245 GO:0004672|GO:0006468
Vimu8g01559 382 Gene3D Phosphorylase Kinase; domain 1 36 152 - -
Vimu8g01559 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vimu8g01559 382 SUPERFAMILY Protein kinase-like (PK-like) 65 349 IPR011009 -
Vimu8g01559 382 SMART serkin_6 78 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01559 382 PANTHER RUST RESISTANCE KINASE LR10-RELATED 50 365 IPR045874 GO:0004672
Vimu8g01559 382 ProSiteProfiles Protein kinase domain profile. 78 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01559 382 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Vimu8g01559 382 FunFam serine/threonine-protein kinase PBS1-like 46 152 - -
Vimu8g01559 382 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Vimu8g01559 382 FunFam PR5-like receptor kinase 153 360 - -
Vimu8g01559 382 Gene3D Transferase(Phosphotransferase) domain 1 153 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01559 Vimu-Chr8 21399355 21401678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01559 10 370 Receptor kinase-like Gene Family AT1G66910 50.000 1.54e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01559 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01559 - - vum:124821711 664.07