Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01557 ATGGATGATAAACATAGTCACATCCACACCTCTCCCCTTGCCTTCGCACTCACCGTCTCTTGCTTCCTCTGCATCGCTTTGCCACGTTCCCACTCTCAACCATCGCCGTCGCCATCGCCACCGCTTTGTGCTGAGCAGTTATACCGGTGCAACATAAGCGTCTCCGCCATCTTCGATCCTCCCTCGGAAAAGATTCCACCCTCTCAATGTAACGGCGCCGACCCACCATCGCTGATCAGCTGCCATGGTGGCTATGGAGCTCAAAATTTCACAGTGAAGGATGTGGACAACACCAATCACACCATGAAAGTGATGCTAAGACCCCCTGTCAACCATGTCTGTTCTCCTCACTTTTTTTTCTATTACGAGAACTTCAACAACATTCTGCTCCTGCATAACGCGCCAGTGCATAAAATCATCATATTCGAACATTGTCCTAAACTCCCAGATTTCCCTTCAAATCGCAAGTTTACTTGCGGGGATGATGTGTATTATTTTGAGGAGGAACACAAGGAAAGGGAGATGCTCGACAAATACCGACGGCTTAGGGATTGCAATGGAAGTTTGAACGTGCCTGCTGCCGGTCCTCTGGATCGTTACGATGACACTGATGACGGAGCTGGAGTTCTGGAAGAAGCTCTCAATGACGCGTTTGAGGTCAATTATAGTAGTATTCCTGATGGTTGCAGAAGATGCGGTGAAAGTGACGAAAGTTGCTCGCCATATGGTTATGGTTATGATGAACATCTTGTTTCATGCAACTACTATTGCCCAAATCAATACTGTTCTCCAGAAAGAAGTGTTACAGGTTCAGCAATTGCAGCAGTGTTGATATCATTTTCAATTCTGTGTGTAAGATACAAGTCACCAACCTGGCAAGCAAATTTTGGGTTGGCTTCAAAAAGTAATCAAAATATCGAAGCATTCCTTAAAATTCATGGCCCTCTAGCTCTGAAAAGATATAAACTATCAGATGTTAAGAAAATGACCAAGAACTTCAGAGTAAAGCTGGGACAAGGTGGTTTTGGTGCAGTGTACAAGGGAGAGTTATCCAATGGTAGTTTTGTGGCTGTAAAGATGTTGAGTGCATCCAAAAAAAATGGTGAAGAATTTGTGAATGAGGTTGCTAGCATCAGTAGAACTTCTCATGTTAACGTTGTCTCTCTTCTTGGATTTTGTTTGAAAGGGCGCAAGAGAGCTCTCATCTATGAATTCATGTCCTATGGTTCCCTTGACAAATTCATTTACACAACAAGAGATGAAACCCTTCCACCCTTGTGCTGGAATATTATATATCAAATTGCAAGGGACATAGCTCGAGGCTTAGAATACTTGCATAAGGGATGCAACACTCGAATTTTTCACTTTGACATAAAACCACATAACATTCTTCTGAATGAGAACTTCTGTGCAAAGATATCTGATTTTGGGTTGGCAAAACTGTGTCCTAGGAATGAAAGTGTTATTTCCCTGTCAGATGCTAGAGGGACAATGGGGTATGTAGCTCCAGAAATGTGGAGTAGAAATTTTGGAAGAGTTTCACATAAGTCAGATGTTTATAGTTACGGAATGATGCTGCTAGAGATGGTGGGAGGGAGGAAGAACATCAATGGTGAAGCAAGTAATACAAGTGAGATATACTTCCCACACTGGGCATACAATAAGATTGAGTTGGACAATGATCTGAGACCAGATATAAAGATGACAACAGAAGAAAATGAGATTGCAAAGAGGTTGGCAATGGTGGGTTTATGGTGTACTCAAACGTTTCCTAATGAGAGACCTACAATGAGCAGAGTGATTGATATGTTGGAAGGTAGCATGGATTCCTTACAAATCCCACCCAAACCTTTGCTTTCTTCTCCCATTAGATCCTGA 1878 0.4276 MDDKHSHIHTSPLAFALTVSCFLCIALPRSHSQPSPSPSPPLCAEQLYRCNISVSAIFDPPSEKIPPSQCNGADPPSLISCHGGYGAQNFTVKDVDNTNHTMKVMLRPPVNHVCSPHFFFYYENFNNILLLHNAPVHKIIIFEHCPKLPDFPSNRKFTCGDDVYYFEEEHKEREMLDKYRRLRDCNGSLNVPAAGPLDRYDDTDDGAGVLEEALNDAFEVNYSSIPDGCRRCGESDESCSPYGYGYDEHLVSCNYYCPNQYCSPERSVTGSAIAAVLISFSILCVRYKSPTWQANFGLASKSNQNIEAFLKIHGPLALKRYKLSDVKKMTKNFRVKLGQGGFGAVYKGELSNGSFVAVKMLSASKKNGEEFVNEVASISRTSHVNVVSLLGFCLKGRKRALIYEFMSYGSLDKFIYTTRDETLPPLCWNIIYQIARDIARGLEYLHKGCNTRIFHFDIKPHNILLNENFCAKISDFGLAKLCPRNESVISLSDARGTMGYVAPEMWSRNFGRVSHKSDVYSYGMMLLEMVGGRKNINGEASNTSEIYFPHWAYNKIELDNDLRPDIKMTTEENEIAKRLAMVGLWCTQTFPNERPTMSRVIDMLEGSMDSLQIPPKPLLSSPIRS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01557 625 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Vimu8g01557 625 PANTHER RUST RESISTANCE KINASE LR10-RELATED 302 617 IPR045874 GO:0004672
Vimu8g01557 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Vimu8g01557 625 Pfam Protein tyrosine and serine/threonine kinase 334 604 IPR001245 GO:0004672|GO:0006468
Vimu8g01557 625 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vimu8g01557 625 Gene3D Phosphorylase Kinase; domain 1 295 405 - -
Vimu8g01557 625 Gene3D Transferase(Phosphotransferase) domain 1 406 613 - -
Vimu8g01557 625 ProSiteProfiles Protein kinase domain profile. 331 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01557 625 FunFam PR5-like receptor kinase 406 616 - -
Vimu8g01557 625 FunFam serine/threonine-protein kinase PBS1-like 300 405 - -
Vimu8g01557 625 SMART serkin_6 331 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01557 625 SUPERFAMILY Protein kinase-like (PK-like) 314 605 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01557 Vimu-Chr8 21367516 21371528 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01557 185 617 Receptor kinase-like Gene Family AT5G38260 42.825 2.45e-116 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01557 PK_Tyr_Ser-Thr 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01557 - - vra:106756549 934.095