Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01556 ATGTTTCTTATAGCTCGTAACTCTTCTAATATATCTACTAACACAGGTAGTGCAAGTGGAGCAATGGGAATATTCATGATATGCCTCATAATAGGTTGTAGAAGACGTATGTCAACAACAAGAAAGGAAAATTTTCATTTTACTAATGAGCAAGATATTGAAGTATTCTTAAAAGATCATGGAACTCTAGCACAAAAGAAATATAAATTTTCAGAAGTCAAGAAAATAACGAAGAATTTCACAGTTAAACTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGTTACACAATGGTTACCATGTGGCTGTAAAATTATTAAGGGCATCAAAAGGAAATGGCAAAGACTTTATCAATGAAGTTGCCAGTATCAGTAGAACTTCTCATGTTAATGTTGTCCAACTTCTTGGATTCTGTTTAGAAGGAAAGAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTTATCGGTAATAAGGGAGTAGAAAGCACTCCATCCTTGAGTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCGAGAGGACTAGAGTACCTGCACAAGGGACGCAACACTCGTATTTTACACTTTGACATAAAACCACATAACATTCTTTTGGATGACAACTTCTGTCCCAAGATATCAGATTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCACTATTTCAGTTTCAGATGCGAGAGGAACAATAGGATATGTAGCTCCAGAAGTGTGCAACAAACATTTTGGTGGAGTTTCACAAAAATCTGATGTGTATAGTTATGGAATGATGCTACTAGAAATAGTGGGAGTGAAGAATAATATTAAAGATGAAGCCACTGAAACAAGTGAATACTTCCCAGATTGGATTTACAGAAAGCTGGAGCAAGACGAAGATTTGAGAAGTGATGATGTGATAGGGACAAAAGAAAAAGAGACAGAAAGGAGAATGATTGCAGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAGGATAGACCTACTATGAGTAGAGTAATAGAAATGTTAGAAGGCAACATCAATTCCCAAGAAATACCCCCAAAGCCTGTTCTTTCTTATCCCTCCATTGAATCGGTTCAAGAATGGACCACTAGTTCTTTGCCGTCTGAGTAA 1155 0.3723 MFLIARNSSNISTNTGSASGAMGIFMICLIIGCRRRMSTTRKENFHFTNEQDIEVFLKDHGTLAQKKYKFSEVKKITKNFTVKLGEGGFGVVYKGELHNGYHVAVKLLRASKGNGKDFINEVASISRTSHVNVVQLLGFCLEGKKKALIYEFMPNGSLDKFIGNKGVESTPSLSWDNLLQIAKGIARGLEYLHKGRNTRILHFDIKPHNILLDDNFCPKISDFGLAKLCPGKESTISVSDARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLEIVGVKNNIKDEATETSEYFPDWIYRKLEQDEDLRSDDVIGTKEKETERRMIAVSLWCIQTFPKDRPTMSRVIEMLEGNINSQEIPPKPVLSYPSIESVQEWTTSSLPSE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01556 384 SMART serkin_6 78 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01556 384 ProSiteProfiles Protein kinase domain profile. 78 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01556 384 FunFam PR5-like receptor kinase 153 362 - -
Vimu8g01556 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Vimu8g01556 384 Pfam Protein tyrosine and serine/threonine kinase 81 350 IPR001245 GO:0004672|GO:0006468
Vimu8g01556 384 FunFam serine/threonine-protein kinase PBS1-like 47 152 - -
Vimu8g01556 384 Gene3D Transferase(Phosphotransferase) domain 1 153 361 - -
Vimu8g01556 384 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Vimu8g01556 384 PANTHER RUST RESISTANCE KINASE LR10-RELATED 50 369 IPR045874 GO:0004672
Vimu8g01556 384 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Vimu8g01556 384 Gene3D Phosphorylase Kinase; domain 1 37 152 - -
Vimu8g01556 384 SUPERFAMILY Protein kinase-like (PK-like) 65 351 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01556 Vimu-Chr8 21361554 21362708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01556 8 380 Receptor kinase-like Gene Family AT1G66910 50.392 1.54e-126 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01556 PK_Tyr_Ser-Thr 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01556 - - vun:114181925 658.677