Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01550 ATGGCAGTATTCATCCTATGCCTCACAATAGGCTGTAGAAAATGTATGTCATCAACAAGAAAGTTAAAATTTCAGATGACTAATGAGAAAGATATTGAAGTATTCTTAGAAGATCACGGAACTCTAGCACAAAAGAAATACAAATTTTCAGAAGTCAAGAAAATGACCAACAACTTCACAGTTAAATTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGTTATGTAATGGTTACCATGTGGCTGTAAAATTATTAAGGGCATCAAAAGGAAATGGCAAAGACTTTATCAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAATGTTGTCCAACTTCTTGGGTTCTGTTTGGAAGGAAAAAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTAGACAAGTTCATCAGTAATAAGGGACTAGAAAGAACTTCATCTTTGAGTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCGAGAGGACTAGAGTACCTGCACAAGGGGTGCAACACTCGTATTTTACACTTTGACATAAAACCACATAACATTCTTTTGGATGACAACTTTTGTCCCAAGATATCAGACTTTGGGCTTGCAAAACTATGTCCTGGGAAAGAGAGCACTATTTCCGTTTCAGATGCGAGAGGAACAATAGGATATGTAGCTCCAGAAGTGTGCAACAAACATTTTGGTGGAGTATCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTGCTAGAAATAGTGGGAGTGAGGAATAATATTAATGATGAAGCCACTGAAACAAGTGAATACTTCCCAGATTGGATATACAGAAAGCTGGAGCAAGAGCAAGATTTGAGAAGTGATGATGTGATAGCGACAAAAGAAAAAGAGACAGAAAGGAGAATGATTGCAGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAGGACAGACCTACTATGAGTAGAGTAATAGAAATGTTAGAAGGCAACATCAATTCCCAAGAAATACCCCCAAAACCTGTTCTTTCTTATCCCTCCGCTGGATTGGTGGAAGAATGGACCACTAGTTCCTTGCGAGTAGATCTTAAAAGTTGTTTTCTTAAAGAAGATCTGTCAACTTAA 1128 0.3785 MAVFILCLTIGCRKCMSSTRKLKFQMTNEKDIEVFLEDHGTLAQKKYKFSEVKKMTNNFTVKLGEGGFGVVYKGELCNGYHVAVKLLRASKGNGKDFINEVASISRTSHVNVVQLLGFCLEGKKKALIYEFMPNGSLDKFISNKGLERTSSLSWDNLLQIAKGIARGLEYLHKGCNTRILHFDIKPHNILLDDNFCPKISDFGLAKLCPGKESTISVSDARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLEIVGVRNNINDEATETSEYFPDWIYRKLEQEQDLRSDDVIATKEKETERRMIAVSLWCIQTFPKDRPTMSRVIEMLEGNINSQEIPPKPVLSYPSAGLVEEWTTSSLRVDLKSCFLKEDLST 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01550 375 FunFam serine/threonine-protein kinase PBS1-like 25 131 - -
Vimu8g01550 375 Gene3D Phosphorylase Kinase; domain 1 16 131 - -
Vimu8g01550 375 SMART serkin_6 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01550 375 Gene3D Transferase(Phosphotransferase) domain 1 132 340 - -
Vimu8g01550 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vimu8g01550 375 SUPERFAMILY Protein kinase-like (PK-like) 43 330 IPR011009 -
Vimu8g01550 375 ProSiteProfiles Protein kinase domain profile. 57 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01550 375 FunFam PR5-like receptor kinase 132 341 - -
Vimu8g01550 375 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Vimu8g01550 375 PANTHER RUST RESISTANCE KINASE LR10-RELATED 29 346 IPR045874 GO:0004672
Vimu8g01550 375 Pfam Protein tyrosine and serine/threonine kinase 60 329 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01550 Vimu-Chr8 21325973 21327100 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01550 1 358 Receptor kinase-like Gene Family AT1G66910 51.630 1.02e-126 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01550 PK_Tyr_Ser-Thr 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01550 - - vun:114181925 670.233