Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01547 ATGGATGATAAACATAGTCACATCCACACCTCTCCCCTTGCCTTCGCACTCACCGTCTCTTGCTTTCTCTGCATCGCTTTGCCATACTCCCACTCTCAACCACCGCTTTGTGCTGAGCAGTTATACCGGTGCAACATAAGCGTCTCCGCCATCTTCGATCCTCCCTGGAAAAAGATTCCACCCTCTCAATGTAACGGCGCCGAGCCACTATCCCTGATCAGCTGCTATAGTATCTATGGATCTCAAAATTTCACAGTGAAGGATATCGACAACACCACTCACACCATGAAACTGATGCCAAGACCCCCTGTCGACCATGTCTGTTCTTCTCAATTTTTTGACAGCTACCACAACTTCGATTACGATAACTTCAACAATGCTCTGCTCCAGTATAACGCGTCAGTGCGTAAAATCATCATATTTAAACATTGTCCTACAATCCCAAATTTCCCTTTAAAACGCAACTTTACGTGCGGGAATGTTCTTTATTATTTTGAAGAGGGGTACACTGAAAAGGAGATGCTCGAATCATACCCACCGCTTAAGGGTTGCAAGGGGGAAATTTTTGACGTGCCTGCTGCCGCTCCTCTGGATCGTTACGAGGATAGTGATGACGGTGCTGGAGTTCTGGAAGAAGCTCTCAATGATGCGTTTGAGGTCAACTATAGTAGTATTCCTCATGGTTGCAGAAGATGCAGAGAAAGAGACGAAAGTTGCTTCACATATGGTTATAGTAATGATGAACATCTAGTTTCATGCAAGTACTATTGCCCAAATGAACAGTGTCCTCCCGAAAAAAAGCACAAAAACTATTCCTTGAATGAGTGTCAGCTTATGGTAAATGCGCCATTTAGCATGAATGCTTCTGTTAATTTCACTGGCTTATTGAGAATGAATTACATTGAGATTTTGAAGACGGGGTTTCATTTGAATTGGACTGCACCTGATTGCGAGTACTGTGAGAAAAGTGGTGGACGTTGTGGATTTGATGGCAATCAGTTTCTCTTTTTCTGCAAGGATAAGTCCTACTTAAGAAGTTGTGGTAGTGGTAATAATATATTTTCAAATATTATGCAATTTCAATCCTACAATGCCATTTCAGAATATGCTAGCCAAATTAGTATACCAGAACATTGGCTAAGTATCTTCATGGATCAGACGATGATGGATGTCAGGCCATTTTATCATGCCAAAACCCTTAGCGCGTACTTTCTTCTTGAGGCATTTGGTGAAATTTCACCAACCTGGCAAGAAAACTTTGGCTTCGCTTCAAAAAGTAATCAAAATATCGAAGCATTCCTTAAAATTCATGGTCCTCTAGCTCTGAAAAGATATAAACTATCAGATGTTAAGAAAATGACCAAGAACTTCAGAGTAAAGCTGGGACAAGGTGGTTTTGGTGCAGTGTACAAGGGAGAGTTATCCAATGGTAGTTTTGTGGCTGTAAAGATGTTGAGTGCTTCCAAAAAAAATGGTGAAGAATTTATGAATGAGGTTGCTAGCATCAGTAGAACTTCTCATGTTAACGTCGTCTCTCTTCTTGGATTTTGTTTGAAAGGTCACAAGAGAGCTCTCATCTATGAATTTATGTCCAATGGTTCCCTTGACAAATTCATTTACAGAACAAGAGATGAAACCCTTTCAGCCTTGAGTTGGGATATTATATATCAAATTGCAAGGGACATAGCTCGAGGCTTAGAATACTTGCATAAGGGATGCAACACTCGAATTTTTCACTTTGACATAAAACCACATAACATTCTTCTGGATGACAACTTCTGTGCAAAGATATCTGATTTTGGGTTGGCAAAACTGTGTCCTAGGAATGAAAGCATTGTTTCTCTGTCAGATGCTAGAGGGACAATGGGGTATGTAGCTCCAGAAATGTGGAGCAGAAATTTTGGAAGAGTTTCGCATAAGTCAGATGTTTATAGTTACGGAATGATGCTGCTAGAGATGGTGGGAGGGAGAAAGAACATCAATGGTGAAGCTAGTAATACAAGTGAGATATACTTCCCACACTTGGCATACAATAAGCTTGAGTTAGACAATGATTTGAGACCAGATATTGAGATGACAGCAGAAGAAAATGAGATTGTAAAGAGGTTGGCTATGGTGGGTTTATGGTGTACTCAAACGTTTCCTAATGACAGACCTACAATGAACAGAGTGATTGATATGTTGGAAGGCAGCATGGATTCCTTACAAATCCCACCCAAACCTTTGCTTTCTTCTCCAACTAGATCAGTACCAGAGTGTGAATTTTATTCGTCTTCTGTTCCCGAGTTTGAACTTAGTTACAGTGGGAGAGGCCACGAGGAGACGCTCAGTGTAGGACTTGAGGAGTTCCGCCCCTCTCAGATTTCTGTCATGCCTCTTTCTCTTGTTCCACTTTCTTCTTCTCTCATAAACACCCTTTTCTTCTTCTCCCTCTTATTCCCAACTTATGCATCTACTGATGCTGAAGGCTGTGGGAAACTCACCAATATTAGCTACCCATTTTGGAGTAAGGACCAGCCAGACTACTGTGGGCATCCAAAGTTCAAGCTTGATTGCCATCACGACAACGTGACAATTGACATCGTGTCACACACATTCCAAGTCATTGACATGAATAAAAAATCTAAGGTTTTGACGATTGCAAGGTTGGATTTATTGGCCGACCCTTGTACTAATGATTATGTGAATGTGAAGTTGGATCCTGAATTCTTTAACTACACTTCTAATGACGATGATTACACTTTGTTATATGACTGCGATTCTCTTGGATATACTGGTAGTGTGAATATTGGAGGAGCAATAGCATTTAATTGCCCCATTGGTGGTCAAGATGGAATTTTTGTGGCGAATACTGAAGTTCTTAAGTTTATTAGTCTGGGGTGCAAGAACAGCATCAATGTTTCTGTTCTGAGAGAGGCTGTGAAGAGTGATTCGGATGTGGGAAATGTTTTAGCAAGTGGGTTTGAGGTTGGATGGAGTGGTGTGAATGAAGATGAATGTGATGGTTGCACAAGATCTAGTGGGAGATGTGGATACAGTTCATCTACGAGTGAATTTATCTGTCTCTGCCAAAATCAGCAATCAGATTCTGAGATTTGTAAACAAATCATAGCAAAGTCTCCAGAACCAACAGCCAGAGTAACACCAGCAAAGTCACAGTTACCCCCTTACCCTCCAGAACAGTCTCCAAATGCTCCGAGTATGTTTTCTTCCATCTCTTGTTTAGATTAA 3231 0.411 MDDKHSHIHTSPLAFALTVSCFLCIALPYSHSQPPLCAEQLYRCNISVSAIFDPPWKKIPPSQCNGAEPLSLISCYSIYGSQNFTVKDIDNTTHTMKLMPRPPVDHVCSSQFFDSYHNFDYDNFNNALLQYNASVRKIIIFKHCPTIPNFPLKRNFTCGNVLYYFEEGYTEKEMLESYPPLKGCKGEIFDVPAAAPLDRYEDSDDGAGVLEEALNDAFEVNYSSIPHGCRRCRERDESCFTYGYSNDEHLVSCKYYCPNEQCPPEKKHKNYSLNECQLMVNAPFSMNASVNFTGLLRMNYIEILKTGFHLNWTAPDCEYCEKSGGRCGFDGNQFLFFCKDKSYLRSCGSGNNIFSNIMQFQSYNAISEYASQISIPEHWLSIFMDQTMMDVRPFYHAKTLSAYFLLEAFGEISPTWQENFGFASKSNQNIEAFLKIHGPLALKRYKLSDVKKMTKNFRVKLGQGGFGAVYKGELSNGSFVAVKMLSASKKNGEEFMNEVASISRTSHVNVVSLLGFCLKGHKRALIYEFMSNGSLDKFIYRTRDETLSALSWDIIYQIARDIARGLEYLHKGCNTRIFHFDIKPHNILLDDNFCAKISDFGLAKLCPRNESIVSLSDARGTMGYVAPEMWSRNFGRVSHKSDVYSYGMMLLEMVGGRKNINGEASNTSEIYFPHLAYNKLELDNDLRPDIEMTAEENEIVKRLAMVGLWCTQTFPNDRPTMNRVIDMLEGSMDSLQIPPKPLLSSPTRSVPECEFYSSSVPEFELSYSGRGHEETLSVGLEEFRPSQISVMPLSLVPLSSSLINTLFFFSLLFPTYASTDAEGCGKLTNISYPFWSKDQPDYCGHPKFKLDCHHDNVTIDIVSHTFQVIDMNKKSKVLTIARLDLLADPCTNDYVNVKLDPEFFNYTSNDDDYTLLYDCDSLGYTGSVNIGGAIAFNCPIGGQDGIFVANTEVLKFISLGCKNSINVSVLREAVKSDSDVGNVLASGFEVGWSGVNEDECDGCTRSSGRCGYSSSTSEFICLCQNQQSDSEICKQIIAKSPEPTARVTPAKSQLPPYPPEQSPNAPSMFSSISCLD 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01547 1076 Pfam Protein tyrosine and serine/threonine kinase 458 728 IPR001245 GO:0004672|GO:0006468
Vimu8g01547 1076 SMART serkin_6 455 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01547 1076 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Vimu8g01547 1076 PANTHER RUST RESISTANCE KINASE LR10-RELATED 426 745 IPR045874 GO:0004672
Vimu8g01547 1076 Pfam Wall-associated receptor kinase C-terminal 257 340 IPR032872 -
Vimu8g01547 1076 Pfam Wall-associated receptor kinase C-terminal 960 1025 IPR032872 -
Vimu8g01547 1076 MobiDBLite consensus disorder prediction 1043 1076 - -
Vimu8g01547 1076 ProSiteProfiles Protein kinase domain profile. 455 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01547 1076 FunFam PR5-like receptor kinase 530 740 - -
Vimu8g01547 1076 Gene3D Transferase(Phosphotransferase) domain 1 530 737 - -
Vimu8g01547 1076 ProSitePatterns Protein kinases ATP-binding region signature. 461 483 IPR017441 GO:0005524
Vimu8g01547 1076 Gene3D Phosphorylase Kinase; domain 1 421 529 - -
Vimu8g01547 1076 CDD STKc_IRAK 461 730 - -
Vimu8g01547 1076 FunFam serine/threonine-protein kinase PBS1-like 424 529 - -
Vimu8g01547 1076 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672|GO:0006468
Vimu8g01547 1076 SUPERFAMILY Protein kinase-like (PK-like) 438 729 IPR011009 -
Vimu8g01547 1076 Pfam Wall-associated receptor kinase galacturonan-binding 824 881 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01547 Vimu-Chr8 21311737 21320183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01547 428 763 Receptor kinase-like Gene Family AT1G66910 52.941 1.02e-113 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01547 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01547 - - vra:106756549 657.521