Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01546 ATGGCAGTATTCATGCTATGCCTCATAATAGGCTGTAGAAAATGTATGTCATCAACAAGAAAGTTAAAATTTCAGATGACTAATGAGCAAGATATTGACGTATTCTTAGAAGATCATGGTACTCTAGCACAAAAGAAATACAGATTTTCAGAAGTCAAGAAAATGACCAACAACTTCACAGTTAAATTGGGTGAAGGTGGGTTTGGTGTTGTATACAAAGGAGAGTTACGCAATGGTTACCATGTGGCTGTAAAATTATTAAGGGCATCAAAAGGAAACGGCAAAGACTTTATCAATGAGGTTGCCAGCATCAGTAGAACTTCTCATGTTAATGTTGTCCAACTTCTTGGGTTCTGTTTGGAAGGAAAAAAGAAAGCCCTTATTTATGAATTCATGCCTAATGGTTCCCTCGACAAGTTCATCACTAATAAGGGACTAGAAAGAACTTCATCTTTGAGTTGGGATAATCTGTTGCAAATTGCAAAAGGGATAGCCACAGGACTAGAGTACTTGCACAAGGGATGCAACACTCGTATTTTACATTTTGACATAAAACCACATAACATTCTTTTGGATGAGAACTTCTGTCCCAAGATATCAGACTTTGGGCTTGCAAAACTTTGTCCTGGGAAAGAGAGCACTATTTCAGTTTCAGATGCAAGAGGAACAATAGGATATGTAGCTCCTGAAGTGTGCAACAAACATTTTGGTGGAGTATCACAAAAATCTGATGTGTATAGCTATGGAATGATGCTACTAGAAATAGTGGGAGTGAGGAATAATATTAATGATGAAGCCATTGAAACAAGTGAATACTTTCCAGATTGGATATACCGAAAGCTGGAGCAAGACCAAGATTTGAGAAGTGATGATGTGATAGCCACAAAAGAAAAAGAGACAGAAAGGAGAATGATTACAGTTAGTTTGTGGTGCATTCAAACGTTTCCAAAGGATAGACCTACTATGAGTAGAGTAATAGAAATGTTGGAAGGTAACATGAATTCCCAAGAAATGCCCCCAAAACCTGTTCTTTCTTCTCCCACAATTGGATTGGTGCAAGAATGGAGCACTAGTTCCTTGCAGTCTGAGGAGGTGTGGGGAGTAGTGGTGGAAGTGGTGGTTAGTGGTGGCGGTCTGGAGAATTTGGTGAAGGACAGAGGAGAATTTGGTGATCGCCACAACTTGTGGCATGTCAGCAGCCTGGAGGGCGATGACCTCACATCGAAGGTGAGGCTTATGGCCGGAGATGAAGCAGCTAAGTGGTGTCATGTGAAAATAAAAAAACTGGGTGATCTTGAAGATCCAACCCATTGCATCATTACCATTGAAAGAAGGAAGCAAAGGTGTGTTGATGATGGGGAGGTGATACAAGTAGTTTGGATTCCAAAAGAGAAGTGCGAGCAGCTATGTCATGTAATGTGTTTGAGAAATTGGCCTAGAAGAGAAGAATTTGCTCCAGCTTTTTGTCAAGGGAAGAAAAAATGTCAGAAAAGACTACCATGGGAGGAAAAGGCTCAATGA 1521 0.4024 MAVFMLCLIIGCRKCMSSTRKLKFQMTNEQDIDVFLEDHGTLAQKKYRFSEVKKMTNNFTVKLGEGGFGVVYKGELRNGYHVAVKLLRASKGNGKDFINEVASISRTSHVNVVQLLGFCLEGKKKALIYEFMPNGSLDKFITNKGLERTSSLSWDNLLQIAKGIATGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESTISVSDARGTIGYVAPEVCNKHFGGVSQKSDVYSYGMMLLEIVGVRNNINDEAIETSEYFPDWIYRKLEQDQDLRSDDVIATKEKETERRMITVSLWCIQTFPKDRPTMSRVIEMLEGNMNSQEMPPKPVLSSPTIGLVQEWSTSSLQSEEVWGVVVEVVVSGGGLENLVKDRGEFGDRHNLWHVSSLEGDDLTSKVRLMAGDEAAKWCHVKIKKLGDLEDPTHCIITIERRKQRCVDDGEVIQVVWIPKEKCEQLCHVMCLRNWPRREEFAPAFCQGKKKCQKRLPWEEKAQ 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01546 506 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 349 IPR045874 GO:0004672
Vimu8g01546 506 Gene3D Transferase(Phosphotransferase) domain 1 132 341 - -
Vimu8g01546 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vimu8g01546 506 Gene3D Phosphorylase Kinase; domain 1 16 131 - -
Vimu8g01546 506 ProSiteProfiles Protein kinase domain profile. 57 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01546 506 FunFam serine/threonine-protein kinase PBS1-like 25 131 - -
Vimu8g01546 506 Pfam Protein tyrosine and serine/threonine kinase 60 329 IPR001245 GO:0004672|GO:0006468
Vimu8g01546 506 FunFam PR5-like receptor kinase 132 341 - -
Vimu8g01546 506 SMART serkin_6 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01546 506 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Vimu8g01546 506 SUPERFAMILY Protein kinase-like (PK-like) 43 330 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01546 Vimu-Chr8 21306480 21308955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01546 7 359 Receptor kinase-like Gene Family AT1G66910 52.101 8.71e-123 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01546 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01546 - - vun:114181925 658.677