Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01539 ATGGAAGATGATCATGATCATATGCATATACATATTTACATGTGTTGGTTATTGTTGATCACTTTGCCACACTCTCACTGTGAAACAAGTGCCACTTTTGATTATTCAGTTTGCAAGAAGCAGTCTTACAACTGTGGAAATTTGTCCAACATCTTCTACCCTTTCTGGGGACACAATCGATCTTCTGAATGTGGCAGTGGCGATCCTTTCAAACTCACCTGCAATCATTATCACAACACTACTTCAATTCAAATTGCCTCCGAAAACTTCACAGTGAAGGAGATCAACAATACTGTTCACACCATGAAACTGGTGCCGGCAGACACTGTTACGAATCTCTGCTCTCCGCAATCTGAGAATGGAAATGAGAGCCACACCGGTTTGTTCCAGGATTCTCCTTCAGTGCAAAAGATTACCATATTTTACTATTGTCCCCGCATCAGAACTTTCTCTTATGGACACTTTATGTGTGGAGATGATATCACTTATTATGCACTGGATTATGATAGGCTTTTCGTTGATTATCCACAACTTGTAAGTTGCAAGCGAAGTTTACACACGTGGAGTGATGCTCAGTTGAATTTTTCTGGTGGAGTTCTTGCTTTGGAGAAAGTTCTCAATGAAGGGTTTGTGGTGAACTATAATGTTTCTCGAGTTTGCGAAAGATGTTTGGGAAGTGAAGGGCGTTGCTGGAGAGATGATATTGAAAAACATGTAGTGAACTCTTGCTACTATTGCCAAAATGGTTCTCATGGCCTACACTGTTCTCCTAGTCCTCCCAAAACCACCACAAGCAGTGTTACAGGTGCAGCAATTGCAACTGTGTTGATATGTACAGCAATTTTCTGTCTAAGATACAAGTCACCAATCATGCAAGGACATTTTGGGTTGACTTCAAAAACTAACAGAAATATTGAAGCATTCCTTAAAAATCATGGAGCTCAAACTCTAAAAAGATACAAATTTTCAGAAGTGAAGAAAATGACCAACTCCTTCAAAGTAAAACTAGGTGAAGGTAGTTTTGGTGCAGTATACAAAGGAGAGATACTCAATGGTTGCCCTGTGGCCATAAAGAAACTGAGTGCATCCAAAGGAAATGGTGAAGACTTTATCAACGAAGTTGCCAGTATCAGTAGAACTTCTCATGTTAATGTTGTTCAGCTTCTTGGATTCTGTTTGGAAGGCAGCAATAAAGCTCTCATTTATGAATATATGTCTAATGGTTCTCTTGACAAGTTTATTTACAATAAGGGAGTCAAAGCCATTCCATCGTTGGGTTGGGATAATTTGTGCCAAATTGCCAAAGGGATAGCTCAAGGACTAGAATATTTGCACAAGGGATGCAACACTCGCATTTTACATTTTGACATAAAACCACACAACATACTTCTGGATGAAAATTTTTGTCCCAAGATATCAGATTTTGGACTGGCAAAGCTTTGCCCCATGAAAGAGAGCACTATTTTCATGTCAGATCAAAGAGGAACAATAGGGTATAGAGCTCCAGAAGTGTGGAACAGACATCTTGGTGGAGTTTCACACAAATCTGATGTTTACAGTTATGGAATGATGCTGCTAGAAATGGTGGGAGGGAGAAGAAACATTAATGCAGAAGCCAATCACCGAAGTGAGATATACTTCCCACACTGGGCATACAACAGGCTAAAGCAGGGTAGAGAATTGAGAGCTGATTGGGTGATAACCACAGAAGAACAGGAAATAGCAAGGAGAATGACCATAGTGGGATTATGGTGTGTTCAAACGATTCCACATGATAGACCTACAATGAGTAGAGTAATAGATATGCTGGAAGCCAACATGAATTCCTTGGAAATGCCTCCAAAACCTGATCATTCTCCTTCCATCAGTTGA 1872 0.4001 MEDDHDHMHIHIYMCWLLLITLPHSHCETSATFDYSVCKKQSYNCGNLSNIFYPFWGHNRSSECGSGDPFKLTCNHYHNTTSIQIASENFTVKEINNTVHTMKLVPADTVTNLCSPQSENGNESHTGLFQDSPSVQKITIFYYCPRIRTFSYGHFMCGDDITYYALDYDRLFVDYPQLVSCKRSLHTWSDAQLNFSGGVLALEKVLNEGFVVNYNVSRVCERCLGSEGRCWRDDIEKHVVNSCYYCQNGSHGLHCSPSPPKTTTSSVTGAAIATVLICTAIFCLRYKSPIMQGHFGLTSKTNRNIEAFLKNHGAQTLKRYKFSEVKKMTNSFKVKLGEGSFGAVYKGEILNGCPVAIKKLSASKGNGEDFINEVASISRTSHVNVVQLLGFCLEGSNKALIYEYMSNGSLDKFIYNKGVKAIPSLGWDNLCQIAKGIAQGLEYLHKGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPMKESTIFMSDQRGTIGYRAPEVWNRHLGGVSHKSDVYSYGMMLLEMVGGRRNINAEANHRSEIYFPHWAYNRLKQGRELRADWVITTEEQEIARRMTIVGLWCVQTIPHDRPTMSRVIDMLEANMNSLEMPPKPDHSPSIS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01539 623 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
Vimu8g01539 623 Pfam Protein kinase domain 333 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01539 623 Gene3D Transferase(Phosphotransferase) domain 1 405 614 - -
Vimu8g01539 623 FunFam PR5-like receptor kinase 405 615 - -
Vimu8g01539 623 Pfam Wall-associated receptor kinase galacturonan-binding 38 105 IPR025287 GO:0030247
Vimu8g01539 623 ProSiteProfiles Protein kinase domain profile. 330 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01539 623 Gene3D Phosphorylase Kinase; domain 1 304 404 - -
Vimu8g01539 623 SMART serkin_6 330 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu8g01539 623 FunFam serine/threonine-protein kinase PBS1-like 299 404 - -
Vimu8g01539 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 301 617 IPR045874 GO:0004672
Vimu8g01539 623 SUPERFAMILY Protein kinase-like (PK-like) 314 604 IPR011009 -
Vimu8g01539 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01539 Vimu-Chr8 21278374 21283344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01539 16 616 Receptor kinase-like Gene Family AT1G66910 39.560 2.56e-132 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu8g01539 Pkinase 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01539 - - pvu:PHAVU_004G155800g 954.125