Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01538 ATGGCTGCGAAAAGATTGTTCAATGATTCTGAACGAGACCCTGATGAGCCAGACGACAAACGGATAAGAAACAACACTACCACACCTTCTTTTGCTTCTGTAATAGGAGAAATGGTCATGATAAAGAACATCGAGAATCTTTTCACTGCAATGGAACCTGTGCTTAAAAGAGTGGTGGGTGAGGAAGTTGAGCGAGTTATGAGACAGTGGTCACGCTCCTTTACCAGGTCTCCTTCGTTGAGACTCCAAGCAATGGAGCAGCCATCGAGCCTGCAATTATGCTTCAGCAAGAGGCTTTTCCTTCCAATTTTCACAGGTAGCAGGATTCTTGACGTTGATGAGAACCCCATCAACATAGTTCTGATGGACAGAAGCAACAACAACGAAATGGTCCCCACAAGTTTCCCACATGCCATCAAGCTCGAGATTCTGGTTATTGATGGAGATTTTTCTCCTTCTGAGGATTGGACGAGTGATGAATTTAACAGACACATAGTGAAGGAAAGACATGGGAAGAGACCTTTACTTGCAGGAGAATTGAACTTGATCATGCGAGATGGAATTGCACCAACTGGGGACATGGAATTCACAGATAACTCTAGTTGGATCCGCTGCAGGAAGTTCAGAGTTGCAGTGAGGGTAGCACCAGGGAGTAACCAAGGAGTTCGAATTCGTGAAGGAATGACTGAAGCATTTATGGTCAAGGATCACCGTGGAGAATTGTACAAAAAACACTACCCTCCAATGCTTGATGACGAAGTGTGGCGCCTGGAAAAGATAGGTAAAGATGGAGCTTTCAACAAAAAGTTGTCTTCGCAGGGCATAAAAACAGTTCAAGAATTTCTTAAACTAGCAGTCGTTGACACTCTCAAGCTAAGAAATATTCTGGGAGTGGGGATGTCAGACAAAATGTGGGAAGTGACAATCAAGCATGCAATGACTTGTGACATAGGGAGCAAGTTGTACATTTATCGTGGACCACAGTTTACTATTTTTCTGGATCCAATATGCAGATTAATTAGAGCTGACATCAGTGGACAGACATTTTCCAACAGAGATCAAATCACCCAATTGAATAAGACCTATGTAGACAAATTGGTGAGAGATGCATACGCGAGATGGCCTAGCTTGGAGGTGATAGATGCGGTTCTGAACGATAACATTGCTGTGTTAACCCAAGTTCTTATGGAAGAACGTATCAGTCCTACATTTAGCAGCAGTTTCCAGCAACCAAGCGAAAATTTGAGATTTTTATTTGGATTCAGCCACACTGACGTTTATGTGAACATAATAACTGTAGGTGATCAAACTGCTGTCTCAGTAGCCACATATGATCAGAATCAGTATTACAGTGGCCAATCTGCAAGCTATGTTGCAAATAACAACACACAGATGGGAAGCAGCGAGTGGTCACTGTATCAAGCCTACAGCACATTGCCGTTTGCTAATGGTTTTCCTTCTAATTTCTCAGCAACACAAACAGATGGAGACATGACCGCTTCAGGTTCAAGCTCTGGATGTTGA 1524 0.4304 MAAKRLFNDSERDPDEPDDKRIRNNTTTPSFASVIGEMVMIKNIENLFTAMEPVLKRVVGEEVERVMRQWSRSFTRSPSLRLQAMEQPSSLQLCFSKRLFLPIFTGSRILDVDENPINIVLMDRSNNNEMVPTSFPHAIKLEILVIDGDFSPSEDWTSDEFNRHIVKERHGKRPLLAGELNLIMRDGIAPTGDMEFTDNSSWIRCRKFRVAVRVAPGSNQGVRIREGMTEAFMVKDHRGELYKKHYPPMLDDEVWRLEKIGKDGAFNKKLSSQGIKTVQEFLKLAVVDTLKLRNILGVGMSDKMWEVTIKHAMTCDIGSKLYIYRGPQFTIFLDPICRLIRADISGQTFSNRDQITQLNKTYVDKLVRDAYARWPSLEVIDAVLNDNIAVLTQVLMEERISPTFSSSFQQPSENLRFLFGFSHTDVYVNIITVGDQTAVSVATYDQNQYYSGQSASYVANNNTQMGSSEWSLYQAYSTLPFANGFPSNFSATQTDGDMTASGSSSGC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01538 507 MobiDBLite consensus disorder prediction 1 26 - -
Vimu8g01538 507 Pfam Calmodulin binding protein central domain 249 315 IPR046830 -
Vimu8g01538 507 MobiDBLite consensus disorder prediction 1 23 - -
Vimu8g01538 507 Pfam Calmodulin binding protein C-terminal domain 320 379 IPR046829 -
Vimu8g01538 507 Pfam Calmodulin binding protein-like N-terminal domain 91 237 IPR046831 -
Vimu8g01538 507 PANTHER OS02G0177800 PROTEIN 2 470 IPR012416 GO:0005516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01538 Vimu-Chr8 21271632 21275434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01538 13 374 Calmodulin-binding Proteins AT5G57580 47.027 4.85e-108 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01538 - - gmx:100803213 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01538 8 21271632 21275434 Vimu8g01538 8 21271632 21275434 ECH