Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01529 ATGGCTGAATTCACAGAAAATTTGCAACTTCAAACCATTAGACCCTCTTCTTTTCCATTCTTAGACATTGATCCAAGCATGGAACTCATAAACCAATTCATTGGGATCAACCAACATGTCATAGACAACTCAAACTTGACTATGCACAACTTGATGCCGTTTTCCTGTGACACCTTCTTGGGCCCTCAAGAACCTGAGTTTCCCGGAAACTTGGATGAAAATTTCCCTGCCCTTGTTCATCATGTCAACCACAATGCACTTCCTGTTTCTCTCCCCATTTTCCAAGCAGAAAATGAGATCCATGAAGGTAAAAAGAGGAAATCGGTGGATCTTCCAGAGACCAGTTCAGCTAACTCAACTCCTGCAGTTTCTGAGACTGGAAGCAAGATAAAACAAAGTTCTGGAAAAGGAAAGAGAGCAAAAAGCAATGTGACAGAAGAAGAGAAAGCAAAGGAAGTGGTCCATGTGAGAGCCAGAAGAGGTCAAGCTACCGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTAAGGTGCTTACAGAATATTGTTCCGGGATGTTACAAGACCATGGGTATGGCAGTAATGTTGGACGAAATCATAAACTATGTGCAGTCCCTGCAGCATCAAGTAGAGTTCCTTTCTCTGAAGCTTACTGCAGCAAGTACCTTTTATGACTTCAATTCCGAGACAGATGCTTTAGAAACAATGCAGGTACCTACTTCTAAAGTTTTCAAGAGAGCAAGAGCATCAGAGGCAAAAGAGTTAGGGAGGTATAAGAGAGAAGGGTATGGAGGAGTTTCTTGCTTTCAGCCAAGTTGGCCACTTTGA 846 0.4208 MAEFTENLQLQTIRPSSFPFLDIDPSMELINQFIGINQHVIDNSNLTMHNLMPFSCDTFLGPQEPEFPGNLDENFPALVHHVNHNALPVSLPIFQAENEIHEGKKRKSVDLPETSSANSTPAVSETGSKIKQSSGKGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQVPTSKVFKRARASEAKELGRYKREGYGGVSCFQPSWPL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01529 281 Gene3D - 158 220 IPR036638 GO:0046983
Vimu8g01529 281 SMART finulus 168 218 IPR011598 GO:0046983
Vimu8g01529 281 FunFam transcription factor BEE 3-like 159 230 - -
Vimu8g01529 281 CDD bHLH_AtBPE_like 152 237 - -
Vimu8g01529 281 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 102 240 IPR024097 GO:0006355
Vimu8g01529 281 MobiDBLite consensus disorder prediction 112 139 - -
Vimu8g01529 281 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Vimu8g01529 281 MobiDBLite consensus disorder prediction 104 168 - -
Vimu8g01529 281 MobiDBLite consensus disorder prediction 140 168 - -
Vimu8g01529 281 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Vimu8g01529 281 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01529 Vimu-Chr8 21182356 21183984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01529 65 281 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 51.613 4.88e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu8g01529 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01529 - - gmx:100806942 488.419