Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01523 TCTTCAGTTGAAGAGGTATATATCAGAAGCTTCTATACTGCTGCTGGTTTGATCAATCTGATGGAGGAAAATCTGCCTCCTGGATTCAGGTTTCATCCTACAGACGAAGAACTCATCACATGTTATCTTACAAAGAAGGTTTCTGATTCTAGCTTCACATCCAAAGCTATAGCAGTCGTTGATCTCAACAAATCTGAACCATGGGACCTACCAGGTAAGGCTTCAATGGGGGAAAAAGAGTGGTACTTCTTTAGCTTAAGAGACAGAAAGTATCCAACTGGACTTCGGACAAACCGAGCGACTGAATCAGGTTACTGGAAAACAACAGGAAAAGACAAGGAAATTTTTCGTACTGGTGTTTTGGTAGGAATGAAGAAAACCCTAGTCTTCTATAGAGGTAGAGCTCCAAGGGGAGAGAAAAGCAATTGGGTCATGCACGAATATAGACTCGAAAACAAGCATCACTTGAGACCTTCCAAGGATGAATGGGTGGTTTGCAGGGTTTTCCAGAAGAGCTTACTGGTGAAGAAACCACAGCAAACGAACTCTTCACAACCAGATTCTCCATGTGACACAGTCTCAGTGGTCAATGAATTTGGTGATGTTGAGCTTCCTACTCTAAATAGCATTGCAAATTCTTCAGGTGGACACACTGACAATATTTCAGGACAGACTTTTATGAATGCTGATATCAGTAACAGTGTTAACACAAGCATGAACTTGGCCATGAATTGGGCAGTTGCAAATGATGTTGATCAGGTTATTCCCTCTCTTCCATCACTACCATGGCCTTCTGGGTTGCTAAGTCCAAGCATTTCTTCTGTAAATTCTTTGCTTCTCAAGGCATTGCAACTTAGAAGTTATCAACAAAGAGAAGCATCAGCAGCAGCAGCAGCTACAGGTCATTTTGCATCATTTATGGGTCAAGGAATTTCCCAAGTTGGAACTGACCTAAGTTCAAATCTGACAGCATCTTCTTCAAAAGTTCAAGAATGTATGCCACAGCAACAACAACAACAGGAGCAACCATTCAATTTGGACTCCATTTGGTGA 1053 0.4169 SSVEEVYIRSFYTAAGLINLMEENLPPGFRFHPTDEELITCYLTKKVSDSSFTSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRTGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLENKHHLRPSKDEWVVCRVFQKSLLVKKPQQTNSSQPDSPCDTVSVVNEFGDVELPTLNSIANSSGGHTDNISGQTFMNADISNSVNTSMNLAMNWAVANDVDQVIPSLPSLPWPSGLLSPSISSVNSLLLKALQLRSYQQREASAAAAATGHFASFMGQGISQVGTDLSSNLTASSSKVQECMPQQQQQQEQPFNLDSIW 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01523 350 MobiDBLite consensus disorder prediction 325 350 - -
Vimu8g01523 350 ProSiteProfiles NAC domain profile. 25 171 IPR003441 GO:0003677|GO:0006355
Vimu8g01523 350 FunFam NAC domain-containing protein 100-like 34 174 - -
Vimu8g01523 350 Pfam No apical meristem (NAM) protein 26 150 IPR003441 GO:0003677|GO:0006355
Vimu8g01523 350 Gene3D NAC domain 34 174 IPR036093 GO:0003677|GO:0006355
Vimu8g01523 350 SUPERFAMILY NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
Vimu8g01523 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01523 Vimu-Chr8 21134974 21136980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01523 21 350 NAC Transcription Factor Family AT3G18400 56.012 2.04e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu8g01523 NAM 2.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01523 - - pvu:PHAVU_004G156700g 526.554