Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01514 GCAGTTCTCTTTGCAGCCAAAAATCAGTTCCTAACTGTGACCGACGAAATGAAAGAAGCAAGTGCATTAGGAGCTAGAACTGCACGAGCATGCGAGAGCTGTCTAAAAGTAAGAGCACGGTGGTATTGTGCTGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCGGCAAACCAATTAGCCCGCAGGCACGAAAGGGTGAAGCTTCAAACTGCATCCTCTAAGGTCAACTACTCAGTGACCTTTAATCAGAACAATAAGGCAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACACCGCGCCACAACAGCAAGCACGTATCGGTGCAGCTACAAGGACAACAGAAGAAAATACACGAAGAAGGAGGAGAAGAAGAAGAAGTGTTTTTCAACAACACCATTAGTCTTCCCCTTGTGCCAGAGCTTGGAAGTGAAGAAGCACTGCACAATTATGAGAGTGAGGAGCAGATATTGTGTCGCGTGCCCGTGTTTGATGCTGAGCTTTGTAGTGTATACAATGAAGTGAAGGAAGAGGTTTTAGCTGGTGAAGAAGTCTTTGACTTAGACAATTTTTCTTCCGAGCTTCTGCCATCAGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTACTTGGAAATGGAGCTGATGAGGATTCATCTGAGCACGTGAAAGGATCAGAACTGCTGCTTGATTGCAAAGAAGAAGATGAAGAAATGGATGCATGTGTTGATGCAGTTGGAGCCAAAGGAACAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATTCTGATACACCTTGCCATTTGGATTCGATTATTCTTGACATGAACAGCGAGGCCTTTAATTGGAATGATATTGTTGAGTCAGAATCACTTGCTCAGGAACAGGAAGAGGAGGCAAGTACAGTGGGAACCGACAAGAAGGACATGTTTTTGAGGCTAAACTATGAAGATGTTATTAGTGCTTGGGCCAGTCAAGGTTCTCCATGGACAACAGGAACCCCACCAAACTTCAACTCTGATGATTGCTGGCCAGATTTCTTGGGTTCGAATGGAGGGAATGTTCAGTGCTGTTATGGGGAAATGAAAAGTTTAAGAGGGCATGCAGATGGTGGAAGAGAAGCAAGAGTGTCAAGATACCGAGAGAAGAGAAGAACTCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAATGCTGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGAACATCCACTGCTTTGCCAGCATAA 1290 0.4442 AVLFAAKNQFLTVTDEMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLARRHERVKLQTASSKVNYSVTFNQNNKAAWHSGFTRKARTPRHNSKHVSVQLQGQQKKIHEEGGEEEEVFFNNTISLPLVPELGSEEALHNYESEEQILCRVPVFDAELCSVYNEVKEEVLAGEEVFDLDNFSSELLPSDMDLAEFAADVESLLGNGADEDSSEHVKGSELLLDCKEEDEEMDACVDAVGAKGTMVKVKDEEELDSDTPCHLDSIILDMNSEAFNWNDIVESESLAQEQEEEASTVGTDKKDMFLRLNYEDVISAWASQGSPWTTGTPPNFNSDDCWPDFLGSNGGNVQCCYGEMKSLRGHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSTALPA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01514 429 CDD Bbox1_BBX-like 30 71 - -
Vimu8g01514 429 ProSiteProfiles CCT domain profile. 380 422 IPR010402 GO:0005515
Vimu8g01514 429 ProSiteProfiles Zinc finger B-box type profile. 26 73 IPR000315 GO:0008270
Vimu8g01514 429 SMART bboxneu5 26 73 IPR000315 GO:0008270
Vimu8g01514 429 Pfam B-box zinc finger 28 73 IPR000315 GO:0008270
Vimu8g01514 429 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 21 424 - -
Vimu8g01514 429 Pfam CCT motif 380 422 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01514 Vimu-Chr8 21086228 21088660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01514 20 422 C2C2-CO-like Transcription Factor Family AT1G25440 44.931 5.83e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vimu8g01514 zf-B_box 2.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01514 - - gmx:100802113 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04751 11 67683684 67685055 Vimu8g01514 8 21086228 21088660 PCT