Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01511 ATGCAAAGCAAGTTACAAGAAGAGAATACATCACAAGATGTAAACAGTGAAAAGATGAAAGGAAGTCCAATCGATTTTTCAAGTAGGAGGATGAGGAAACCATCAAGCATGTACAAAGGTGTTCAACGTAGGAAATGGGGGAAGTATGTAGCAGAAATCAGAGACCCTATTCAAGGGGTGAGAGTGTGGCTTGGTACATTTGATACTGAACAAGAGGCTGCTATGGCTTATGAGAGAAAGAAGAATGAGTTTGAAAGGTCGAGAAAAAGGGATGCAGTGGCTTTTGACAGTACCAAAGAAGTGTTGTTTCATGCATCTCCATCGTCAGTGCTTGATGTCTGCACTACAAAAGCTTCACTAGATGTTAGTGACCTGAATGATTCAGTCAAAGAAAAGTTCAGTGTGGAAAAGGTTGGTGAAGATGTGGAAGCAGTTAACAGTGAAGATAATTCAACACAGCTTTTGCTGGAGGAGCCAGTTATGCCATCATTGTTTGGTTATGATGGTTTCTATTTGGATGAAGCAGAGAAAAGGGGAATTCTGCTTGATAATGAGTTTTATAATTTCTTGGACAATGACAACAAAGGTGGTTTTATGTGGAATGTGGAACATGGGGAAGCCACTGTTCTTCCTCCTGTGGACAGTGCTTTTGATGAGTTAGCTTGGATTGATGAAACTCTAGATTGGGAAAGCTCATAA 699 0.4034 MQSKLQEENTSQDVNSEKMKGSPIDFSSRRMRKPSSMYKGVQRRKWGKYVAEIRDPIQGVRVWLGTFDTEQEAAMAYERKKNEFERSRKRDAVAFDSTKEVLFHASPSSVLDVCTTKASLDVSDLNDSVKEKFSVEKVGEDVEAVNSEDNSTQLLLEEPVMPSLFGYDGFYLDEAEKRGILLDNEFYNFLDNDNKGGFMWNVEHGEATVLPPVDSAFDELAWIDETLDWESS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01511 232 Pfam AP2 domain 38 85 IPR001471 GO:0003700|GO:0006355
Vimu8g01511 232 PANTHER DNA-BINDING DOMAIN 20 88 IPR044808 GO:0003700|GO:0009873
Vimu8g01511 232 MobiDBLite consensus disorder prediction 1 22 - -
Vimu8g01511 232 CDD AP2 36 79 IPR001471 GO:0003700|GO:0006355
Vimu8g01511 232 ProSiteProfiles AP2/ERF domain profile. 37 96 IPR001471 GO:0003700|GO:0006355
Vimu8g01511 232 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Vimu8g01511 232 MobiDBLite consensus disorder prediction 1 39 - -
Vimu8g01511 232 SMART rav1_2 37 110 IPR001471 GO:0003700|GO:0006355
Vimu8g01511 232 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Vimu8g01511 232 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vimu8g01511 232 SUPERFAMILY DNA-binding domain 36 84 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01511 Vimu-Chr8 21068360 21069369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01511 32 94 AP2-EREBP Transcription Factor Family AT1G72360 58.730 8.55e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu8g01511 AP2 7.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01511 - - pvu:PHAVU_004G157600g 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01511 8 21068360 21069369 Vimu8g01511 8 21068360 21069369 ECH