Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu8g01488 | ATGAAGTGTGAAGTTTATTTCTTTTCTATTTTCACGTTCCAAGCTAACATTCACTCTGCAGTCACCCATGTTTCTTTTGTAGCAGGAATACTCCACACATTCTCCATTTTTAATCAAGAAAAATCAGAAATGTTTCCTGAAACACTAGCTATTCCTGCACTACTCCTTGTGGTATTCATATTTGTTGTATCAGTTGCTGTGTTGAAAGCAAAACAAGGCCAAGATAATGGAAAACATCCACCTGGTCCCAAGCCCCTGCCAATTATTGGTCATCTCCACATGCTAGGGAAATTACCACACCGCACCCTTCAATCCCTTGCAGCAAAATATGGACCTATAATGTCCTTAAAGCTAGGACAGGTTCCAACCATTGTGATATCTTCACCAGAAACAGCTGAACTATTCCTCAAGACTCATGACATTACTTTTGCTTCCAGGCCTAAAAGCATCTCATCCCACTATATTTCCTATGGTGGTAAAGGCTTAGTTTTTTCTGAGTATGGTCCCTACTGGCGCAACATGAGGAAACTCTGCACAGTACAACTTCTGATTGCATCAAAAGTTGAGATGTATTCTCCTCTGAGAAGTGAGCTGTTGGCGGAGTTTGTCTGCTTTCTGCAGAAGACAGCATCGTCACATGAGGTTACGGATGTCAGTGATACTGTAGGGGATCTCATTGAGAATCTCACCTTTAAAATGATCTTTGGTCGCAGTAAGGACGATAGATTCGATGTAAAGAACCTTGTTCGTGAGGTACTGAACTTGGCAGGAACTTTCAATGTTGCAGATTATTTGCCTTGGCTACGCATGTTCGATCTTCAGGGACTAGTAAAACGATTAAAGAAAGTGTGTAAATCATTTGACGTAGTCATGGAGCAGATTATCAAAGACCACGAACAGGATTCTGATAAAGAACAAAAGGGCCAAAAGGATTTTGTGGACATATTACTTGCACTTCTGCATCAACCCCTGGATCCTCAGGATGAACATGGTCCTGTGATTGAAAGAACACATATCAAGGCTATTGTGATGACTATGATTATTGCAGGAGTTGACACATCTGCCACAACGGTTGAGTGGGCCATGTCAGAACTCTTAAAGCATCCAAGGGTGATGAAGAAACTTCAAGATGAGTTGGAAAGTGTGGTGGGGATGAATAGAAAGGTGGAGGAAACTGATATGGAAAAGTTGACTTATTTGGACTTAGTTGTGAAGGAGACACTAAGGTTGTACCCTGTTGCACCTTTGCTGGTACCTCGTGAGTGTAGAGAAGATGTTACTATAGATGGTTACTCCATAAAGAAAAAGTCAAGGGTGATAGTAAATGCATGGGCTTTGGGGAGAGATTCTAAAGTTTGGTCAGATAATGCTGAGGAGTTTTGTCCTGACAGGTTTTCCAATAGCAATGTGGACATAAAAGGATTTGACTTTAGACTCATACCATTTGGTTCAGGTCGCAGAGGGTGCCCTGGGATTCATTTGGGTCTCACCACTGCTAAGATTGTTCTGGCTCAATTGGTTCATTGCTTCAATTGGGAGCTTCCTTTGGGCATGTCCCCTGATGAATTGGACATGACTGAGAAATTTGGTCTTACAATGCCAAGAAGTAAGCATTTGCTAGCTGTGCCAACTTATCGCCTGACAGATGAACAACATGTTCGATCTAACACTACTCATTCTCCTAGCCATCCTAGTCTCATTAATCTACATCCTACACACCACCGCGTCACGACGGAGACAGCCACCGTCTCCTCTGGGCTACCGCGGTTACCGATAATCGGAAACCTCCACATGATGGGTCCTATAATGTCGTTACAACTGGGAAACGTTCCGACCGTTGTGGTCTCGTCTCCGGAGGCCGCGGAACTGTTCCTCAAAACCCACGACGCTGTGTTCGCGAACAGGCCCAAGTTCGAAGCGGCCCAATACACGTACGGCCCAGAGAGCGTGGCGTTTGCAGAGTACGGCGCGTACTGGCGCGGCGTGAGGAAGGTGTGCACCACGCACCTGCTGAGCGCGTCGAAGGTGGAGCGGTTTGCGCCTTTGAGGAAGAGGGAGGTTGGGGCGATGGTGGAGTGGTTGAGGGAAGCGGCGGCGGCGCGTGAAGTTGTGAACCTCAGTGAGCGAGTGGGGGAAGTTTTGATTGACATGGCATGTAAGATGGTGCTGGGAAGGAACAAGGATTATAGATTTGACTTGAAAGGGATTCTTTTGGAGACAATGAGCGTTTCAGGAGCTTTCAATTTGGCAGATTATTTGCCTTGGTTTCGACCCTTTGATCTTCAGGGATTAACACAACGATCAAAGAAAATCAGTAAAGCGCTTGATGAAATGTTGGAGGAGATTATCGAAGAACACGAAGGGGTTCCTAAAGCAGAAGGGCACCTTAACGATTTCATCGACACACTACTTTCGTTGAAAGACCAACCAATGCATCGACATGTTGAAGATGCAGCTGTGATCGATAAAAGAAGCATAAAGGGTATTGTGTTTGACATGGTAATCGGTGCATCAGAAACTTCGAGCAACGTGATTGAATGGGCCATTTCAGAACTGGTGCGACATCCTAGAGTGATGGAAAGTGTTCAAGACGAGCTGAAAGATGTGGTTGGAATGAAGAAGATGGTGGAGGAGATTGATTTGGCAAAACTAAGTTATCTGGATATGGTTGTGAAGGAGACCCTACGGCTTCACCCTGCTGTGCCCTTACTAGCACCTCATGAATCAATGGAGGATATAGTGATAGAAGGCTATTACATCAAGAAGAAGTCACGAATAATAATAAATGCATGGGCCATAGGGAGAAACCCGACAGTGTGGTCGGAAAATGCTCATATGTTTTACCCTGAAAGATTTGTCGACAGCAACATAGATTTTAAGGGACAAGACTTTCAACTTATACCGTTTGGGTCTGGTCGGAGAAGCTGTCCAGGAATGGTGATGGGTTTGAACATAGTTAAATTAGTTATAGCACAATTGGTGCACTGCTTCAACTGGGAGTTACCTTACGGCATTGCTCACCATGAATTAGATATGAATGAGAAATCAGGCTTATCAATGCCACGAGCAACTCCTTTGCTTCTCATTCCAACTTATCGTCTTCTTTATCAAACTTTTGTGAATTGA | 3126 | 0.4437 | MKCEVYFFSIFTFQANIHSAVTHVSFVAGILHTFSIFNQEKSEMFPETLAIPALLLVVFIFVVSVAVLKAKQGQDNGKHPPGPKPLPIIGHLHMLGKLPHRTLQSLAAKYGPIMSLKLGQVPTIVISSPETAELFLKTHDITFASRPKSISSHYISYGGKGLVFSEYGPYWRNMRKLCTVQLLIASKVEMYSPLRSELLAEFVCFLQKTASSHEVTDVSDTVGDLIENLTFKMIFGRSKDDRFDVKNLVREVLNLAGTFNVADYLPWLRMFDLQGLVKRLKKVCKSFDVVMEQIIKDHEQDSDKEQKGQKDFVDILLALLHQPLDPQDEHGPVIERTHIKAIVMTMIIAGVDTSATTVEWAMSELLKHPRVMKKLQDELESVVGMNRKVEETDMEKLTYLDLVVKETLRLYPVAPLLVPRECREDVTIDGYSIKKKSRVIVNAWALGRDSKVWSDNAEEFCPDRFSNSNVDIKGFDFRLIPFGSGRRGCPGIHLGLTTAKIVLAQLVHCFNWELPLGMSPDELDMTEKFGLTMPRSKHLLAVPTYRLTDEQHVRSNTTHSPSHPSLINLHPTHHRVTTETATVSSGLPRLPIIGNLHMMGPIMSLQLGNVPTVVVSSPEAAELFLKTHDAVFANRPKFEAAQYTYGPESVAFAEYGAYWRGVRKVCTTHLLSASKVERFAPLRKREVGAMVEWLREAAAAREVVNLSERVGEVLIDMACKMVLGRNKDYRFDLKGILLETMSVSGAFNLADYLPWFRPFDLQGLTQRSKKISKALDEMLEEIIEEHEGVPKAEGHLNDFIDTLLSLKDQPMHRHVEDAAVIDKRSIKGIVFDMVIGASETSSNVIEWAISELVRHPRVMESVQDELKDVVGMKKMVEEIDLAKLSYLDMVVKETLRLHPAVPLLAPHESMEDIVIEGYYIKKKSRIIINAWAIGRNPTVWSENAHMFYPERFVDSNIDFKGQDFQLIPFGSGRRSCPGMVMGLNIVKLVIAQLVHCFNWELPYGIAHHELDMNEKSGLSMPRATPLLLIPTYRLLYQTFVN | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu8g01488 | 1041 | Pfam | Cytochrome P450 | 598 | 1020 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | Pfam | Cytochrome P450 | 80 | 538 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | CDD | CYP71-like | 109 | 539 | - | - | |
| Vimu8g01488 | 1041 | Coils | Coil | 761 | 781 | - | - | |
| Vimu8g01488 | 1041 | SUPERFAMILY | Cytochrome P450 | 586 | 1033 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | CDD | CYP71-like | 600 | 1026 | - | - | |
| Vimu8g01488 | 1041 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 482 | 491 | IPR017972 | GO:0005506|GO:0016705 | |
| Vimu8g01488 | 1041 | Gene3D | Cytochrome P450 | 573 | 1027 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | Gene3D | Cytochrome P450 | 65 | 546 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | SUPERFAMILY | Cytochrome P450 | 80 | 546 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | FunFam | Cytochrome P450 83B1 | 572 | 1029 | - | - | |
| Vimu8g01488 | 1041 | FunFam | Cytochrome P450 83B1 | 66 | 542 | - | - | |
| Vimu8g01488 | 1041 | PRINTS | P450 superfamily signature | 349 | 366 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | PRINTS | P450 superfamily signature | 402 | 413 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | PRINTS | P450 superfamily signature | 480 | 489 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | Coils | Coil | 372 | 392 | - | - | |
| Vimu8g01488 | 1041 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 969 | 978 | IPR017972 | GO:0005506|GO:0016705 | |
| Vimu8g01488 | 1041 | PANTHER | CYTOCHROME P450 93A3-LIKE | 55 | 548 | - | - | |
| Vimu8g01488 | 1041 | PRINTS | E-class P450 group I signature | 338 | 355 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | PRINTS | E-class P450 group I signature | 107 | 126 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | PRINTS | E-class P450 group I signature | 966 | 976 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | PRINTS | E-class P450 group I signature | 888 | 906 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | PRINTS | E-class P450 group I signature | 358 | 384 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Vimu8g01488 | 1041 | PRINTS | E-class P450 group I signature | 976 | 999 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu8g01488 | Vimu-Chr8 | 20938816 | 20944472 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu8g01488 | 54 | 544 | Cytochrome P450 | AT3G26300 | 39.880 | 1.12e-123 | 385 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu8g01488 | - | - | gmx:100798918 | 1562.74 |