Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01485 ATGGACTTCGTGGATATTTTGTTGTCACTCATGTACCAACCTGAGGATGTTCAAAATCACCAAGATGCCATTGATAGAACAAACGTGAAAGCTATCATATTAGATATAATAATTGCATCATTTGAGACCTCTTCGTCAACAGTAGAATGGGCCATGTCACAACTCTTGAGGCACCCTACTATCATGAAGAGACTTCAACAAGAGCTAGAACATGTGGTAGGAATGAACAGACACGTGGAGGAAAATGATTTAGAAAAGTTGTCTTATTTGAACATGGTGGTGAAGGAAACACTAAGGTTACACCCGGTCGGACCTTTGTTGGTACCTCGCGAGTGTCGAGAAGATGTCACCATTGATGGCTATTTGATAAAGAAAAAAACAAGGGTTATGGTAAATGTTTGGGCTATAGGTCGAGATCCAAAAGTTTGGGACAAGGCCGAGATTTTCGACCCTACAAGGTTTGAGAATAACAACGTAGATGTTCGTGGAAACGACTTTCGAATTTTACCCTTTGGGTCGGGTCGAAGAGGGTGCCCCGGGATTCATATGGGTTTAACGACGATTAGTCTTATTTTGGCTGAATTAGTGCATTGTTTTGATTGGATGCTTCCATTGGGCATGTCCTGTGATGAGTTAGACATGGAAGAGATATTTGCACTTGCCATGCCAAGAAAAAAGCATCTATTAACTAGACCAGTTTATCGACTACTTGCTTAG 717 0.4128 MDFVDILLSLMYQPEDVQNHQDAIDRTNVKAIILDIIIASFETSSSTVEWAMSQLLRHPTIMKRLQQELEHVVGMNRHVEENDLEKLSYLNMVVKETLRLHPVGPLLVPRECREDVTIDGYLIKKKTRVMVNVWAIGRDPKVWDKAEIFDPTRFENNNVDVRGNDFRILPFGSGRRGCPGIHMGLTTISLILAELVHCFDWMLPLGMSCDELDMEEIFALAMPRKKHLLTRPVYRLLA 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01485 238 Gene3D Cytochrome P450 1 233 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 SUPERFAMILY Cytochrome P450 2 235 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PRINTS E-class P450 group I signature 91 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PRINTS E-class P450 group I signature 132 156 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PRINTS E-class P450 group I signature 48 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PRINTS E-class P450 group I signature 28 45 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PRINTS E-class P450 group I signature 168 178 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PRINTS E-class P450 group I signature 178 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PANTHER CYTOCHROME P450 93A3-LIKE 1 236 - -
Vimu8g01485 238 FunFam Predicted protein 37 230 - -
Vimu8g01485 238 PRINTS P450 superfamily signature 39 56 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PRINTS P450 superfamily signature 92 103 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 PRINTS P450 superfamily signature 169 178 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 Pfam Cytochrome P450 1 228 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01485 238 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 171 180 IPR017972 GO:0005506|GO:0016705
Vimu8g01485 238 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01485 Vimu-Chr8 20914129 20914845 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01485 10 237 Monolignol Biosynthesis Gene Families AT4G36220 48.472 1.10e-75 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01485 - - var:108345921 441.039