Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01480 ATGTTTGCTCCTCTGAGGAGACAAGAATTGAGAGTGTTGGTGAAGTCTCTGAAAAATTCTGCAGCATCAGGTGAGGTTGTCGATCTGAGTGAGTTGCTGGGAGAGCTTATGGAGAACATCGTGTTCAAAATGGTGTTGGGGAGTGCCAAAGATGATAGATTTGACTTAAAATTGCTGGTTCACGAAGTGTTGAACTTGATTGGACTATTCAATCTTGCAGATTACATACCCTGGTTAGGAGGAATAACAAAAAGATTAAAGAAAGCAGCAAAGTCATTTGATGAGCTATTGGAACAAATAATCCAAGAACACGAAAGTAATCCATATGACGAAGATCAAAATCGAAAGATGGACTTTGTGGATATTTTGCTGTCACTCACGCACCAACCCAATGATCTTCATAATCTCCAAAACGCCATTGATAGAACAAACGTAAAAGGTATCATAATAGACATTATAAGTGCAACATTTGACACCTCTTCCACAACACTAGAATGGGCCATGTCACAACTCTTGAGGCACCCAACTGTCATGAAGAGACTTCAACAGGAGCTAGAACATGTGGTCGGAATGAACAGACACGTGGAGGAAAATGACTTGGAACAGTTGTCTTATTTGAACATGGTGGTGAAGGAAACCCTAAGGTTACACCCGATTGTACCTTTGCTATTACCTCGTGAGTGTAGAGAAGATGTAACTATTGATGGTTATTTGATAAAGAAAAAAACAAGGGTTATAGTAAATGCTTGGGCTATAGGGCGAGATCCTAAAGTTTGGGACAGAGCCGAGATTTTTGACCCTACAAGGTTTGAGAATAACAACGTAGATGTTCGTGGAAAAGACTTTCGGATTTTACCATTTGGGTCGGGTCGAAGAATGTGCCCCGGGATTCATTTGGGTTTAACGACGATTAGTCTTGTTTTGGCTGGATTAGTGCATTGTTTTGATTGGAAGCTTCCATTGGGAATGTGTTGTGATGAGTTAGACATGGAAGAGATATTTGGACTCACCACACCAAGAAAGAAGCATTTGCTCACTAAACCAGTTTATCGACTCGTCATTTAG 1065 0.4056 MFAPLRRQELRVLVKSLKNSAASGEVVDLSELLGELMENIVFKMVLGSAKDDRFDLKLLVHEVLNLIGLFNLADYIPWLGGITKRLKKAAKSFDELLEQIIQEHESNPYDEDQNRKMDFVDILLSLTHQPNDLHNLQNAIDRTNVKGIIIDIISATFDTSSTTLEWAMSQLLRHPTVMKRLQQELEHVVGMNRHVEENDLEQLSYLNMVVKETLRLHPIVPLLLPRECREDVTIDGYLIKKKTRVIVNAWAIGRDPKVWDRAEIFDPTRFENNNVDVRGKDFRILPFGSGRRMCPGIHLGLTTISLVLAGLVHCFDWKLPLGMCCDELDMEEIFGLTTPRKKHLLTKPVYRLVI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01480 354 PRINTS P450 superfamily signature 208 219 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 PRINTS P450 superfamily signature 285 294 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 PRINTS P450 superfamily signature 155 172 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 Pfam Cytochrome P450 3 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 Coils Coil 178 198 - -
Vimu8g01480 354 Gene3D Cytochrome P450 1 350 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 ProSitePatterns EF-hand calcium-binding domain. 110 122 IPR018247 -
Vimu8g01480 354 PRINTS E-class P450 group I signature 248 272 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 PRINTS E-class P450 group I signature 294 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 PRINTS E-class P450 group I signature 144 161 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 PRINTS E-class P450 group I signature 284 294 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 PRINTS E-class P450 group I signature 207 225 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 PRINTS E-class P450 group I signature 164 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 SUPERFAMILY Cytochrome P450 2 351 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu8g01480 354 FunFam Uncharacterized protein 16 347 - -
Vimu8g01480 354 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 287 296 IPR017972 GO:0005506|GO:0016705
Vimu8g01480 354 PANTHER CYTOCHROME P450 93A3-LIKE 2 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01480 Vimu-Chr8 20884515 20887534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01480 7 353 Monolignol Biosynthesis Gene Families AT4G36220 42.234 2.16e-91 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01480 - - vum:124839090 627.861