Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01462 ATGACTGAAACTAAGTCAACCAGTAAGATTATCAAGAAGCAGGACTCAAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCTGTGCGGTTTGTACCAGTTCCTGACCCACCTAGTGATTTTGGACAATCAAACTCCTGGATATGTAAGAATTCTGCTTGTCGAGCAGTTCTCTCTAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCCAGCCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGATTATCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTTGGAGTTGTTGATCATGGACAACTGATGCAATTAGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTCGACGAGTAGATGTACTATGTTTCAGGATATATTTGAGCTACAGGCTTTTGGATGGTACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAAGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAAATGGCACGTGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTCCAAAACCTCTGCTCTCTTGCTATTGAGAAAGCTGATGAGTGGTTGGCCACTGTTCCCAATGTAAATCCAGAATCCAGAGAGGGTTCACTTCCCGCTGCCTGCAAGGTTGTGTTTGAAGAGGTGACGTCTTCCTCAGTCAAAATAATTTTAATTGAAATGTCAAATGCATCTTCTGGGGACGTTAAGGGATACAAGCTATGGTATTACAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTTTTTCCCAAATCTCAGAGAAGGGTTTTGTTATCCAACCTCCAACCTTGCACGGAATATACATTTCGGATTGTATCTTTTACTGATACGGGTGACCTGGGTCACTCTGAGACCAAGTGTTTCACCAAGAGCGTTGAGATATTGGAAAAGAATTCATCTTCATCAGTGGCTGTGAATCAAAAAAAGAACCTTCAAGCTGAGTGCAATTCTTCTGGTTCCAAATTGGAGCCCAATCCCACATCAGCTGACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATCTTGCATCTTACTTGGGCTCAAGAACAAGGTAGCTTTGAGGGGTTTTGCTGTGCTGACAAGAGAAACTGCTGTGGGCAGAGTGAAACTATCAAGCCTAGCAAACCACAAGAGCAGTTGCCTTCAGTTTCGCGAGACCTCGATCTAAATGTTGTTTCAGTGCCTGATTTAAACGAAGAGCTGACACCTCCGTTTGAGTCTTCCAGGGATGAAGATAACGGTTGTACCTTGCAGCAGGCTGTTGAGGCTGATGATGATGCTGCTTCTCATGATTTAGACAAAAATTTAGCAAGATCACATGGTAGTGGTGGTTCGCAAACATGGAACCATGTACAAACGGGAGAAGTTCCTGCTGTTGACTCACGTGGAGATGCAAGTAGGAAAAGGAAAGCTAACACAAACGAAGAGACACATGATTGTGACAGCACTTTGATAAATGACTCTCCTTTGCGCCCTTCTGATGGTCCATTCTCTTTAGATGAAAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGCTAGAATGTCAGGGTCATATCAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCGACAGAGCAAGAACGAAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCAGGGCAGCTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCAAGAAATGGGTTCTGCAACAAGACTGTGACATCAAATTAA 1947 0.4253 MTETKSTSKIIKKQDSKKVSGVSNQSSRKQHRKGENPVRFVPVPDPPSDFGQSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQNLCSLAIEKADEWLATVPNVNPESREGSLPAACKVVFEEVTSSSVKIILIEMSNASSGDVKGYKLWYYKSREESHTKDPVCVFPKSQRRVLLSNLQPCTEYTFRIVSFTDTGDLGHSETKCFTKSVEILEKNSSSSVAVNQKKNLQAECNSSGSKLEPNPTSADSGFKVRDLGKILHLTWAQEQGSFEGFCCADKRNCCGQSETIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLDKNLARSHGSGGSQTWNHVQTGEVPAVDSRGDASRKRKANTNEETHDCDSTLINDSPLRPSDGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTSN 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01462 648 Gene3D Immunoglobulins 244 355 IPR013783 -
Vimu8g01462 648 PANTHER VIN3-LIKE PROTEIN 2-RELATED 11 643 IPR044514 GO:0010048|GO:0040029
Vimu8g01462 648 MobiDBLite consensus disorder prediction 1 16 - -
Vimu8g01462 648 MobiDBLite consensus disorder prediction 496 555 - -
Vimu8g01462 648 Pfam Fibronectin type III domain 262 343 IPR003961 GO:0005515
Vimu8g01462 648 ProSiteProfiles Fibronectin type-III domain profile. 259 356 IPR003961 GO:0005515
Vimu8g01462 648 CDD FN3 262 351 IPR003961 GO:0005515
Vimu8g01462 648 MobiDBLite consensus disorder prediction 501 516 - -
Vimu8g01462 648 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Vimu8g01462 648 MobiDBLite consensus disorder prediction 1 46 - -
Vimu8g01462 648 SUPERFAMILY Fibronectin type III 261 342 IPR036116 GO:0005515
Vimu8g01462 648 MobiDBLite consensus disorder prediction 523 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01462 Vimu-Chr8 20743773 20752488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01462 54 639 PHD Gene Family AT3G24440 49.668 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01462 - - gmx:100780157 1226.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01462 8 20743773 20752488 Vimu8g01462 8 20743773 20752488 ECH
Vimu11g04730 11 67563686 67572873 Vimu8g01462 8 20743773 20752488 PCT