Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g01457 ATGAGGAAGAAAACCTATTCTTTCCACTTCTCACTCTCACTCTCTCTTTCTCTCTTCGTTGTTGTGCTTTTGCAGTCGCTCTGTGTTTCTGAAGGAATCTCTCACAATGGGCCTCTCACCGACGCGGAAGCCAGCTACATCAAGCAGCGCCAGCTTCTGTACTACAAGGATGAGTTCGGTGACAGAGGAGAAAAAGTAACCGTAGATCCCTCTTTCCGCTTCGAGAACGACCGTTTGAGAAACGCATACATAGCGTTACAGGCATGGAAGCAGGCCATTCTCTCTGATCCAAAAAACCTCACGCGAGACTGGGTGGGGCCCGATGTCTGCAACTACACCTACGTCTTCTGCGCTCAAGCACTTGACAACCCTAAGATCCGCACCGTCGCCGGAATCGACCTCAACCACGGCGACATTGCCGGGTATCTCCCCGAGGAGCTCGGCTTGCTCACTGACCTTGCGCTCCTCCACATCAACACCAACCGCTTCTGCGGCACCGTGCCGCACAAGTTCGACAAGCTCAAACTCCTCTTCGAGCTGGATCTCAGTAACAACCGATTTGCCGGGAAGTTCCCCGACGTGGTGCTGCGTCTGCCGCAGCTCAAGTTCCTAGATCTGAGGTTCAACGAATTCGAAGGCACGGTCCCCAAGGAGCTCTTCGACAAGGACCTCGACGCCATTTTCATCAACGACAACCGCTTCGTGTTCGACCTGCCGGATAACTTTGGCAACTCGCCGGTGTCCGTGATCGTGCTGGCCAACAACCGCTTCCATGGCTGCGTGCCGGCTGGAATCGGTAACATGAAGGGGTTGAACGAGATTATTCTGATGAACAACGCTTTTAGGTCGTGCTTCCCCGAGGAGATAGGGTTGCTGAAGAACTTGACTGTGTTCGATGTGAGCTTCAACCAGTTGTTAGGTCCTTTGCCTGATGCCATCGGAGGCGCCGTGAGTTTGGAGCAGCTCAATGTGGCTCATAATTTACTCTCTGGGAAGATTCCCGAGAGCATTTGCAAGCTTCCCAATCTCCAGAACTTTACTTTCTCTTACAACTTCTTCACCGGCGAGCCGCCGCGGTGTCTCGCTTTGCCGGCGGCTGACGACCGCCGCAACTGCCTACCGAACAGGCCGTACCAGCGCTCCGCAGGACAATGCAAGTCGTTTTTGTCACACCCTGTAGATTGCAAGTCTTTTAGGTGTAAGCCTTTTGTTCCTACCTTGCCTCCTCCTCCTCCTCCATCACCACCATTGCCGTCACCGCCACCGTCGCCAGTTTATGTCCCCCGCTCCCCTCCGCCCCCACCGCCGGTGTACTCGCCTCCACCACCAGTGTACTCGCCACCACCACCACCTCCAGTGTATTCGCCTCCTCCACCACCTCCAGTGTATTCTCCTCCACCGCCGCCGCCACCGCCTCCACCTCCGCCACCTTCACCACCTCCGCCTTCACCGCCCCCGCCAGTCTATTCTCCACCTCCACCCCCACCTTCACCGCCACCACCATCACCACCTCCGCCATCCCCTCCACCGCCAGTCTATTCGCCACCTCCTCCTCCCCCATCCCCGCCACCACCAGTCTATTCGCCACCTCCTCCGCCACCTTCCCCGCCACCGCCCTCACCAGTTTATTGTGTAAGGTCTCCGCCACCACCTTCACCACCTCCGCCATCACCTCCACCTCCACCAAGTCCTGTATTCTCCCCACCACCACCCGTGCAATACTACTACAGTCCACCACCGCCACCACAACACTCGCCTCCCCCGCCCCCACCACACTCACCACCGCCACCACATTCACCTCCGCCTCCAGTTTATCCCTATCTGTCACCGCCCCCACCTCCTCCTGTTCACTCTCCACCTCCACCGGTCCATTCACCACCACCACCATCTCCTCCACCTTGTATAGAACCGCCACCACCACCTCCCCCCTGTATAGAACCGCCTCCGCCTCCGCCATCACCACCACCTTGTGAAGAGCATTCGCCACCACCACCATCACCACATCCTGCACCTTACCTGCCACCGCCATCGCCATCACCGCCACCTCCTCCAGTTCAATACAGTTCTCCTCCACCACCATCATCGCCACCTGTTTATTATTACAACTCACCGCCGCCCCCGCCTCCTTCGTCTCCACCACCAGCCCCTGTATATGAAGGGCCTTTGCCACCCGTCATAGGAGTCTCATATGCATCTCCTCCTCCACCTCCCTTTTATTGA 2220 0.5734 MRKKTYSFHFSLSLSLSLFVVVLLQSLCVSEGISHNGPLTDAEASYIKQRQLLYYKDEFGDRGEKVTVDPSFRFENDRLRNAYIALQAWKQAILSDPKNLTRDWVGPDVCNYTYVFCAQALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALLHINTNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPDVVLRLPQLKFLDLRFNEFEGTVPKELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCVPAGIGNMKGLNEIILMNNAFRSCFPEEIGLLKNLTVFDVSFNQLLGPLPDAIGGAVSLEQLNVAHNLLSGKIPESICKLPNLQNFTFSYNFFTGEPPRCLALPAADDRRNCLPNRPYQRSAGQCKSFLSHPVDCKSFRCKPFVPTLPPPPPPSPPLPSPPPSPVYVPRSPPPPPPVYSPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPPPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPSPPPPVYSPPPPPPSPPPPVYSPPPPPPSPPPPSPVYCVRSPPPPSPPPPSPPPPPSPVFSPPPPVQYYYSPPPPPQHSPPPPPPHSPPPPHSPPPPVYPYLSPPPPPPVHSPPPPVHSPPPPSPPPCIEPPPPPPPCIEPPPPPPSPPPCEEHSPPPPSPHPAPYLPPPSPSPPPPPVQYSSPPPPSSPPVYYYNSPPPPPPSSPPPAPVYEGPLPPVIGVSYASPPPPPFY 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g01457 739 Gene3D Ribonuclease Inhibitor 246 367 IPR032675 -
Vimu8g01457 739 FunFam Leucine-rich repeat extensin-like protein 5 245 384 - -
Vimu8g01457 739 MobiDBLite consensus disorder prediction 409 428 - -
Vimu8g01457 739 MobiDBLite consensus disorder prediction 614 633 - -
Vimu8g01457 739 FunFam Leucine-rich repeat extensin-like protein 1 83 244 - -
Vimu8g01457 739 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 19 551 - -
Vimu8g01457 739 Gene3D Ribonuclease Inhibitor 83 245 IPR032675 -
Vimu8g01457 739 MobiDBLite consensus disorder prediction 456 609 - -
Vimu8g01457 739 PRINTS Proline rich extensin signature 408 424 - -
Vimu8g01457 739 PRINTS Proline rich extensin signature 449 470 - -
Vimu8g01457 739 PRINTS Proline rich extensin signature 431 443 - -
Vimu8g01457 739 MobiDBLite consensus disorder prediction 645 739 - -
Vimu8g01457 739 SUPERFAMILY L domain-like 83 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g01457 Vimu-Chr8 20707125 20713599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g01457 30 436 Leucine-rich Repeat extension Gene Families AT3G24480 71.814 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g01457 - - gmx:106799218 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01457 8 20707125 20713599 Vimu8g01457 8 20707125 20713599 ECH